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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGCAAGACATGTGAAACATCACTGTCCAAATCTGGTATTCTCCGGATTAATGACTATTGGGATGCCTGATTATACGTCTACCCCAGAGAACTTCAGGgtattctactacttgattggatacttgttttacgtgttctcgggttattcctacaagttttacttaccaaggtttattcttttccccataaaccgggacag

Basic information

species Arabidopsis thaliana
transcript AT4G26860.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076079|gb|DR371836.1|DR371836
EST:     TAATGACTATTGGGATGCCTGATTATACGTCTACCCCAGAGAACTTCAGG                         ACACTTTCAAACTGTAGAGCTGATGTATGCAAGGCACTTGGAATGGCTGAG
genomic: TAATGACTATTGGGATGCCTGATTATACGTCTACCCCAGAGAACTTCAGGgtattctact ... accgggacagACACTTTCAAACTGTAGAGCTGATGTATGCAAGGCACTTGGAATGGCTGAG
EST: gi|116472743|gb|EG515335.1|EG515335
EST:     TAATGACTATTGGGATGCCTGATTATACGTCTACCCCAGAGAACTTCAGG                         ACACTTTCAAACTGTAGAGCTGATGTATGCAAGGCACTTGGAATGGCTGAG
genomic: TAATGACTATTGGGATGCCTGATTATACGTCTACCCCAGAGAACTTCAGGgtattctact ... accgggacagACACTTTCAAACTGTAGAGCTGATGTATGCAAGGCACTTGGAATGGCTGAG
EST: gi|86082547|gb|DR378306.1|DR378306
EST:     TAATGACTATTGGGATGCCTGATTATACGTCTACCCCAGAGAACTTCAGG                         ACACTTTCAAACTGTAGAGCTGATGTATGCAAGGCACTTGGAATGGCTGAG
genomic: TAATGACTATTGGGATGCCTGATTATACGTCTACCCCAGAGAACTTCAGGgtattctact ... accgggacagACACTTTCAAACTGTAGAGCTGATGTATGCAAGGCACTTGGAATGGCTGAG