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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGGAGAGAAATGAGAATCACACGCTTTGTCTCAACTCTGCTAAAGCTGTTGGATGCTCTGTTGTTAATATTGGCACACAAGACCTGGCCGAAGGACGGgtatgttttctctgcttagtattcagtgtacgtttgaaaatatttcaacacacatcaataagtgtaattatgtgcaccgttctgaccagtgagcttttatgatgttttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G26700.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: LOC_Os02g37580.1 (Oryza sativa), 5'ss of exon 5
GTGGGAGAGAAATGAGAATCACACGCTTTGTCTCAACTCTGCTAAAGCTGTTGGATGCTCTGTTGTTAATATTGGCACACAAGACCTGGCCGAAGGACGGgtatgttttctctgcttagtattcagtgtacgtttgaaaatatttcaacacacatcaa-taagtgtaattatgtgcaccgttctgaccagtgagcttttatgatgttttgcag
||||||||| |||||||||||||| |||||||| |||||||| || ||  |||| ||| |||||||||| ||||||||||| ||| ||   ||||   | |||||| || | |||| | ||||          ||||  | | ||   || || |||| ||  | | || |  | |    || | || | | |  | ||   ||   ||    
GTGGGAGAGGAATGAGAATCACACCCTTTGTCTTAACTCTGCAAAGGCCATTGGCTGCACTGTTGTTAACATTGGCACACAGGACTTGATTGAAGCTAGAgtatgtcttttgtgct-actattt------tccttgatgaaactttg-caaacttcaaatagttctcatgacttccttactttttactatttaattatt-caattcatt----

upper sequence: AT4G26700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G010937_T01 (Zea mays), 5'ss of exon 5
GTGGGAGAGAAATGAGAATCACACGCTTTGTCTCAACTCTGCTAAAGCTGTTGGATGCTCTGTTGTTAATATTGGCACACAAGACCTGGCCGAAGGACGGgtatgttttctctgcttagtattcagtgtacgtttgaaaatatttcaacacacatcaataagtgtaattatgtgcaccgttctgaccagtgagcttttatgatgttttgcag
 |||||||||||||| ||||||||||| || ||||| || || || ||  |||||||| ||||||| || ||||||||||| ||  |||  || ||| ||||||| | | | ||| |    || |        ||  || |      || |  ||   | ||| |||||             | |    |||   || || |  ||      
ATGGGAGAGAAATGAAAATCACACGCTCTGCCTCAATTCCGCCAAGGCCATTGGATGCACTGTTGTCAACATTGGCACACAGGATTTGGTGGAGGGAAGGgtatgatatgtgtgcctgcccttgacgccttacttctaactc-----actcctatgtttcagtttaatttatcttggaaagttaagtgatga-tgttcatcaaatt------

upper sequence: AT4G26700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GRMZM2G556845_T01 (Zea mays), 5'ss of exon 4
GTGGGAGAGAAATGAGAATCACACGCTTTGTCTCAACTCTGCTAAAGCTGTTGGATGCTCTGTTGTTAATATTGGCACACAAGACCTGGCCGAAGGACGGgtatgttttc------tctgcttagtattcagtgtacgtttgaaaatatttcaacacacatcaataagtgtaatta--------tgtgcaccgttctgaccagtgagcttttatgat-gttttgcag------------------------------------------------------
 |||||||| || ||||| || || ||||||||||||||||| || ||  |||| ||| |||||||||| ||||| |||||||| |||   ||||   ||||| ||||||      |||| ||  ||||  ||   |  | |  || |   | |   |  |||||   || ||| |        ||  ||  ||| |   ||   |  |||  |  |   ||||||                                                       
ATGGGAGAGGAACGAGAACCATACCCTTTGTCTCAACTCTGCCAAGGCCATTGGTTGCACTGTTGTTAACATTGGAACACAAGATCTGATTGAAGCCAGGgtacgttttcacgttatctgattgttattttgttctccctagtcaagaagacgagg-aggtcaatttttggaatgacaaattattgaccattgttgtccgcaacaacatttggtagtcaatttgcaatttatcaattagttacatcatttcgtggactaaatatcttatgcttctttgcag

upper sequence: AT4G26700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S271_37V6.1 (Physcomitrella patens), 5'ss of exon 1
GTGGGAGAGAAATGAGAATCACACGCTTTGTCTCAACTCTGCTAAAGCTGTTGGATGCTCTGTTGTTAATATTGGCACACAAGACCTGGCCGAAGGACGGgta-tgttttctctgc--ttagtattcagtgtacgtttga-aaatatttcaa-cacacatcaataagtgtaa--ttatgtgcaccgttctgacca-gtgagcttttatgatgttttgcag---------------------------------
||||||| |||  ||||||||||| ||||||||||| |||||||||||| |||| ||||||||||| || |||||||| |||||| ||| ||| ||| ||||| ||  |  |   |  ||  || | ||  ||  | | |  ||| |   || |     |   |   ||| |  | ||||    | || | |    |||| | |  ||  |   |    |                                 
GTGGGAGCGAATAGAGAATCACACCCTTTGTCTCAATTCTGCTAAAGCTATTGGTTGCTCTGTTGTCAACATTGGCACTCAAGACTTGGGCGACGGAAGGgtaatgactagtgcacgatttttactaaggatagatgtaacgaatgtacgaagcttgtgttgttggttgttagctgatgttggacattttaatggtgtgaccatccatagttggtgcttgatctcattagtcatgatgtgtgggttggtgcag

upper sequence: AT4G26700.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: PP1S314_45V6.1 (Physcomitrella patens), 5'ss of exon 4
GTGGGAGAGAAATGAGAATCACACGCTTTGTCTCAACTCTGCTAAAGCTGTTGGATGCTCTGTTGTTAATATTGGCACACAAGACCTGGCCGAAGGACGGgta----tgttttctctgcttagtattcagtgtacgtt-tgaaaatatttcaac--acacatcaataagtgtaattatgtgcaccgttctgaccagtgagctttt--atgatgttttgcag------------------------------------------------
 |||||  |||  ||||||||||| ||||| ||||| || ||||||||  ||||||||||||| || || |||||||| || ||| | | ||| ||| |||||        | | |  ||| || |    || ||||   ||| ||||   |      |  |  ||  |   ||| |   |     || |    | |  |  ||   ||||  |  |  |                                                 
ATGGGAACGAATAGAGAATCACACACTTTGCCTCAATTCCGCTAAAGCCATTGGATGCTCTGTAGTCAACATTGGCACTCAGGACTTAGGCGACGGAAGGgtaatgacaagtgcacgtctttgtttaggatgaacgtaacgaatatatgaaactttgtatgttgatgtggacaataagacgtgttcttttcgtgaatttgtattagaatgagatggtaaaacacacttcttgcttaattttgtgagtcattttgtgtgggtgaatgcag