1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTGGCAAGGCTTAGTGGCCTATATCAACTTGGGCTGTTACTACATTTTTGGCCTTCCCTTTGGATATCTTCTTGGTTACATTGCAAACTTTGGAGTGATGgttagagaatttagaaaatggcatgagttaagtcagttaatgctgaagctaaaacttatgtataatgttttcag
species | Arabidopsis thaliana |
transcript | AT4G25640.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCCTTCCCTTTGGATATCTTCTTGGTTACATTGCAAACTTTGGAGTGATG GGACTTTGGTCTGGAATGATAGCCGGGACAGCGCTTCAAACGTTGEST: gi|125284198|gb|EL298283.1|EL298283
genomic: GCCTTCCCTTTGGATATCTTCTTGGTTACATTGCAAACTTTGGAGTGATGgttagagaat ... atgttttcagGGACTTTGGTCTGGAATGATAGCCGGGACAGCGCTTCAAACGTTG
EST: GCCTTCCCTTTGGATATCTTCTTGGTTACATTGCAAACTTTGGAGTGATG GGACTTTGGTCTGGAATGATAGCCGGGACAGCGCTTCAAEST: gi|124854466|gb|EH938903.1|EH938903
genomic: GCCTTCCCTTTGGATATCTTCTTGGTTACATTGCAAACTTTGGAGTGATGgttagagaat ... atgttttcagGGACTTTGGTCTGGAATGATAGCCGGGACAGCGCTTCAA
EST: TTCCCTTTGGATATCTTCTTGGTTACATTGCAAACTTTGGAGTGATG GGACTTTGGTCTGGAATGATAGCCGGGACAGCGCTTCAAACGTTGTTACTG
genomic: TTCCCTTTGGATATCTTCTTGGTTACATTGCAAACTTTGGAGTGATGgttagagaat ... atgttttcagGGACTTTGGTCTGGAATGATAGCCGGGACAGCGCTTCAAACGTTGTTACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGGCAAGGCTTAGTGGCCTATATCAACTTGGGCTGTTACTACATTTTTGGCCTTCCCTTTGGATATCTTCTTGGTTACATTGCAAACTTTGGAGTGATGgttagagaatttagaaaatggcatgagttaagtcagttaatgctgaagctaaaacttatgtataatgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG