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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATTCAGTGATTATCTAGAGGCTGCTGATACTCCCGGATGGTACTGTGGTCCTAACTTCTATACTACTGAATTCCTACGCAACTTTTCAAGATCGCAGgtatgattcacaaatgaaggaaaacaaacaagattttgaaggagcttatctgatggaactttgtgtcttttgttttggcag

Basic information

species Arabidopsis thaliana
transcript AT4G24260.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G24260.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G02160.1 (Glycine max), 5'ss of exon 5
ACTATTCAGTGATTATCTAGAGGCTGCTGATACTCCCGGATGGTACTGTGGTCCTAACTTCTATACTACTGAATTCCTACGCAACTTTTCAAGATCGCAGgtatg----attca--caaatgaaggaaaacaaacaagattttgaaggagcttatctgatggaactttgtgtcttt----tgttttggcag--------------------------------
 ||||  ||||||||||| || ||||||||||| || |||||||| ||||| ||||| |||| | | || ||  | || || | |||| | |  || ||||| ||    ||||    |  | |||  | |  |     ||        |   |  || |||  |   | |  || |    ||| | |||                                  
CCTATATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACCGACGTGCTCCGTAGCTTTGCCAAGTCCCAGgtgtgtgatattctgctactttaagagagatgatgtctatggcatcaaactcttcctaatgttatcgtatcactatgaggtgtctgggctaatttttcttttctcttctgtgtgtttttgcag

upper sequence: AT4G24260.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G13080.1 (Glycine max), 5'ss of exon 5
ACTATTCAGTGATTATCTAGAGGCTGCTGATACTCCCGGATGGTACTGTGGTCCTAACTTCTATACTACTGAATTCCTACGCAACTTTTCAAGATCGCAGgtatgattcacaaatgaaggaaaacaaacaagattttgaaggagcttatctgatggaactttgtgtcttttgttttggcag---------------------------------------------
 || |  ||||||||||| || ||||||||||| || |||||||| ||||| ||||| |||| | | |||||  | || || || ||| | |   | ||||| ||    |       |    || | | | ||| |  | ||     | ||  | | | | |   |  | |   |  |  |                                             
CCTTTATAGTGATTATCTTGATGCTGCTGATACACCTGGATGGTATTGTGGACCTAATTTCTTTTCAACTGATGTGCTCCGTAATTTTGCCAAGACCCAGgtgtgtgatattgtgctactttaagagagatgatgtctatggcatccaactcttcgtaatgttaatgatatcactaagaggtgtatggactaatttttcttttcccttttgtcggtgtttttgcag

upper sequence: AT4G24260.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G40090.1 (Glycine max), 5'ss of exon 3
ACTATTCAGTGATTATCTAGAGGCTGCTGATACTCCCGGATGGTACTGTGGTCCTAACTTCTATACTACTGAATTCCTACGCAACTTTTCAAGATCGCAGgta-----tgattcacaaatgaaggaaaacaaacaagattttgaaggag---cttatctgatggaactt-tgtgtcttt-tgttttggcag
 || | |||||||||||| || ||||||||||| || |||||||| ||||| || || ||||   | |||||  | || ||  ||||| |||   | |||||      |  ||  |   |  |  | || ||  | ||| |   |  ||   ||   || ||     || | ||||||  || ||| | ||
CCTTTACAGTGATTATCTCGATGCTGCTGATACACCTGGATGGTATTGTGGACCCAATTTCTTCTCAACTGATGTTCTTCGAGACTTTGCAAAGACCCAGgtgggtgctagttttctgctccataataataatgatgatgtaatacaagtgtctgggctaataatctttctctgtcttggtgattttgtag

upper sequence: AT4G24260.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G00710.1 (Glycine max), 5'ss of exon 3
ACTATTCAGTGATTATCTAGAGGCTGCTGATACTCCCGGATGGTACTGTGGTCCTAACTTCTATACTACTGAATTCCTACGCAACTTTTCAAGATCGCAGgtatgattcacaaa----------------tgaaggaaaacaaacaagattttgaaggag----cttat-----------ctgatggaactttgtgtcttttgttttggcag-----------
 || | |||||||||||| || ||||||||||| || |||||||| ||||| || || ||||   | |||||  |||| ||  ||||| |||   | |||||  |    ||                   | || || || ||  |  ||| ||||        ||||            |||   |  ||   | ||||||  |||  |             
TCTTTACAGTGATTATCTCGATGCTGCTGATACACCTGGATGGTATTGTGGACCCAATTTCTTCTCGACTGATGTCCTTCGAGACTTTGCAAAGACCCAGgtgggtgctacggtgctagtattctgctccttaatgataataattataattatgaaaagaaattcttacaagtcaagcggctgtctgggctaaatatctttttcttttcccttttctgtgtag

upper sequence: AT4G24260.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv12s0035g02180.t01 (Vitis vinifera), 5'ss of exon 5
ACTATTCAGTGATTATCTAGAGGCTGCTGATACTCCCGGATGGTACTGTGGTCCTAACTTCTATACTACTGAATTCCTACGCAACTTTTCAAGATCGCAGgtatg---------attcacaaat---------gaaggaaaacaaacaagattttgaaggagcttat-ctgatggaact--ttgtgtcttttg---ttttggcag-----------------
 || | |||||||||||| || |||||||| || || |||||||| ||||| ||||| |||||| | |||||| |||| ||  | ||| | |   | ||||||||         ||||   |||         || |||| |  |    | |  || || |    ||  || ||||||       |||  ||    ||||   |                  
CCTGTACAGTGATTATCTTGAAGCTGCTGACACCCCTGGATGGTATTGTGGACCTAATTTCTATTCAACTGAAGTCCTGCGTGAATTTGCCAAGACCCAGgtatgcgatatctgattcctcaattaaagttgtgagggaacatgagtctgctcatgtagtaataaatattgttggaaccaacaaggtcacttaaatttttcatatctctgaccttctggcag