1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcctcattgcccagaccatgcctgttactgacactcacaagcaattacaaacacgataaacaagtttcgtaatctgtgctggctttttggctgtgtag
species | Arabidopsis thaliana |
transcript | AT4G23470.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GCAAGTATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATT GGTTTCATGGTTTGCCTCAGCCAAGTGGEST: gi|125189739|gb|EL204693.1|EL204693
genomic: GCAAG-ATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCAAGTGG
EST: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATT GGTTTCATGGTTTGCCTCAGCCAEST: gi|116434599|gb|EG477191.1|EG477191
genomic: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCA
EST: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATT GGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCAEST: gi|86038879|gb|DR334634.1|DR334634
genomic: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCA
EST: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATT GGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCAEST: gi|301501098|gb|HO206638.1|HO206638
genomic: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCA
EST: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATT GGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCAEST: gi|124789102|gb|EH878781.1|EH878781
genomic: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCA
EST: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATT GGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCEST: gi|164048543|gb|ES145217.1|ES145217
genomic: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTC
EST: TTCAAACGACAAAATGTGACAACTGCATCATT GGTCTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCAEST: gi|86038878|gb|DR334633.1|DR334633
genomic: TTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCA
EST: TGCAAGATGAGTTCCAAATTCAAACGACAAAATNNNNCAACTGCATCATT GGTTTCATGGCTTGCCTCAGCCAAGTNGG-TTGCATATTCTCCATAGTTGCEST: gi|86038882|gb|DR334637.1|DR334637
genomic: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCAAGT-GGCTTGCATATTCTCCATAGTTGC
EST: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATT GGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCAEST: gi|301502433|gb|HO207973.1|HO207973
genomic: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCA
EST: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATT GGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCAEST: gi|86038877|gb|DR334632.1|DR334632
genomic: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCA
EST: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATT TEST: gi|86038877|gb|DR334632.1|DR334632
genomic: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtag-
EST: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATT TEST: gi|124728187|gb|EH819589.1|EH819589
genomic: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtag-
EST: CCAAATTCAAACGACAAAATGTGACAACTGCATCATT GGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCAEST: gi|116434598|gb|EG477190.1|EG477190
genomic: CCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCA
EST: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATT GGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCA
genomic: TGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcc ... ggctgtgtagGGTTTCATGGTTTGCCTCAGCCAAGTGGCTTGCATATTCTCCATAGTTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTCTGCTGCTTTGCAAACTCTGTGGCCTCAACTCGCTTTCTTCTGCAAGATGAGTTCCAAATTCAAACGACAAAATGTGACAACTGCATCATTgtaagtatcctcattgcccagaccatgcctgttactgacactcacaagcaattacaaacacgataaacaagtttcgtaatctgtgctggctttttggctgtgtag
- - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGATG