1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGCCACACAGTTGCGCGTAAACTTAACTCAGATGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGgtaactaatacaattctcgttaagcttcataaatgttctattgtggatgaaatatccttatataccgtttgctttcaattgcaaaattctgcag
species | Arabidopsis thaliana |
transcript | AT4G22740.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAG ATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAAEST: gi|116464062|gb|EG506654.1|EG506654
genomic: TGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGgtaactaata ... aattctgcagATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAA
EST: CTCAGATGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAG ATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAAEST: gi|86077542|gb|DR373299.1|DR373299
genomic: CTCAGATGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGgtaactaata ... aattctgcagATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAA
EST: CTCAGATGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAG ATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAA
genomic: CTCAGATGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGgtaactaata ... aattctgcagATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCACACAGTTGCGCGTAAACTTAACTCAGATGGCCGTGTTGATACAACTCAGACCTTGCACAATTTGAATGAAGgtaactaatacaattctcgttaagcttcataaatgttctattgtggatgaaatatccttatataccgtttgctttcaattgcaaaattctgcag
- - - - - - - - - - - - - - CAGATG