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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCATTTCAGCTGTGGGGATAAATGAGATGCTGAGGCGCCATATGTACAAGCAGTCGTGATATCTTCTGGTCTGACTTAATTAACTAGGAACTACTAGTgtaagtgaagtttgatttaacagattatgatacttatatatcagcattgtccaaatatggtaattgacttctgtatcacaactctcttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G22360.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125301683|gb|EL315768.1|EL315768
EST:     AGCAGTCGTGATATCTTCTGGTCTGACTTAATTAACTAGGAACTACTAGT                         GTGTGTATCTAG
genomic: AGCAGTCGTGATATCTTCTGGTCTGACTTAATTAACTAGGAACTACTAGTgtaagtgaag ... tctcttgcagGTGTGTATCTAG
EST: gi|125043760|gb|EL116029.1|EL116029
EST:     AGCAGTCGTGATATCTTCTGGTCTGACTTAATTAACTAGGAACTACTAGT                         GTGTGTATCTAGGGAACCTACTT
genomic: AGCAGTCGTGATATCTTCTGGTCTGACTTAATTAACTAGGAACTACTAGTgtaagtgaag ... tctcttgcagGTGTGTATCTAGGGAACCTACTT
EST: gi|125090910|gb|EL148733.1|EL148733
EST:     CTTCTGGTCTGACTTAATTAACTAGGAACTACTAGT                         GTGTGTATCTAGGGAACCTACTTATGACTCCTTACTGTAGAACTCTGATAG
genomic: CTTCTGGTCTGACTTAATTAACTAGGAACTACTAGTgtaagtgaag ... tctcttgcagGTGTGTATCTAGGGAACCTACTTATGACTCCTTGCTGTAGAACTCTGATAG