Sequence
atgc intronic sequence ATGC exonic sequenceCCTCATTCCTGAAAATTATCAGCACTGCAAGTCTCCTCTTGTTCACCGTTTTGGGGAACTAACTCGCAAGATTTGGCATGCTCGAAACTTTAAAGGACAAgtctgactcaatttatgcctctcacttttagtttttgttatgccctcacctgttgaggacctcgctaatttaagtcaccttgcatcaacag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G22285.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G22285.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 5
CCTCATTCCTGAAAATTATCAGCACTGCAAGTCTCCTCTTGTTCACCGTTTTGGGGAACTAACTCGCAAGATTTGGCATGCTCGAAACTTTAAAGGACAAgtctgactc-----aatttatgcctctcacttttagtttttgttatgccctcacctgttgaggacctcgctaatttaagtcaccttgcatcaacag
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TCTTATCCCTGAAAATTATCAACACTGCAAATCTCCACTTGTTCATCGATTTGGTGAACTCACTAGGAAAATCTGGCATGCACGGAACTTTAAAGGACAGgtttgtttctgagaaattcattgtatataatattattataaattat--tataatttgatggtgacttgttt--ttcaatatgcat---gtctacag
upper sequence: AT4G22285.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 5
CCTCATTCCTGAAAATTATCAGCACTGCAAGTCTCCTCTTGTTCACCGTTTTGGGGAACTAACTCGCAAGATTTGGCATGCTCGAAACTTTAAAGGACAAgtctgactcaatttatgcctctcacttttagtttttgtta--tgccctcacctgttgaggacctcgctaatttaagtcaccttgcatcaacag
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TCTTATCCCTGAAAATTATCAACACTGCAAATCTCCACTTGTTCATCGATTTGGTGAACTCACTAGGAAAATCTGGCATACACGGAACTTTAAAGGACAGgtttgtttctgataattcattgtatataatattattataaattattataatttgatggtgacttgtct--ttcaatatgcat---gtcaacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86059785|gb|DR355542.1|DR355542EST: TTGGGGAACTAACTCGCAAGATTTGGCATGCTAGAAACTTTAAAGGACAG GTGAGTCCACATGAGTTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACGC
genomic: TTGGGGAACTAACTCGCAAGATTTGGCATGCTCGAAACTTTAAAGGACAAgtctgactca ... gcatcaacagGTGAGTCCACATGAATTCTTGCAAGCTGTCATGAAAGCCAGCAAGAAACGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCTCATTCCTGAAAATTATCAGCACTGCAAGTCTCCTCTTGTTCACCGTTTTGGGGAACTAACTCGCAAGATTTGGCATGCTCGAAACTTTAAAGGACAAgtctgactcaatttatgcctctcacttttagtttttgttatgccctcacctgttgaggacctcgctaatttaagtcaccttgcatcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA