1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCTGTCAACGTGGCTGTATATTTGGCTCAGgttcatatctgatttttagcttcttttttttttaattcccgtttatgttgtagttgctgagtttcctgagatccatttatatacatcttttgcaattatt...
species | Arabidopsis thaliana |
transcript | AT4G21790.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGGCTGTATATTTGGCTCAG ATTGGTATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTTGEST: gi|125293705|gb|EL307790.1|EL307790
genomic: TGGCTGTATATTTGGCTCAGgttcatatct ... tctctatcagATTGGTATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTTA
EST: AGCTGCGGATAACCTATATTTCTGTCAACGTGGCTGTATATTTGGCTCAG ATTGGTATCTGGGCATACAEST: gi|125073502|gb|EL137810.1|EL137810
genomic: AGCTGCGGATAACCTATATTTCTGTCAACGTGGCTGTATATTTGGCTCAGgttcatatct ... tctctatcagATTGGTATCTGGGCATACA
EST: GTCAACGTGGCTGTATATTTGGCTCAG ATTGGTAATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTTEST: gi|86038983|gb|DR334738.1|DR334738
genomic: GTCAACGTGGCTGTATATTTGGCTCAGgttcatatct ... tctctatcagATTGGT-ATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTT
EST: AGCTGCGGATAACCTATATTTCTGTCAACGTGGCTGTATATTTGGCTCAG ATTGGTATCTGGGCATACATCTGGGTA-ATGATAA-AGCACTGTGGAGTTAEST: gi|125172890|gb|EL194816.1|EL194816
genomic: AGCTGCGGATAACCTATATTTCTGTCAACGTGGCTGTATATTTGGCTCAGgttcatatct ... tctctatcagATTGGTATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTTA
EST: TATATTTGGCTCAG ATTGGTATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTTAEST: gi|124742254|gb|EH833416.1|EH833416
genomic: TATATTTGGCTCAGgttcatatct ... tctctatcagATTGGTATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTTA
EST: AGCTGCGGATAACCTATATTTCTGTCAACGTGGCTGTATATTTGGCTCAG ATTGGTATCTGGGCATACATCTGGGTACA
genomic: AGCTGCGGATAACCTATATTTCTGTCAACGTGGCTGTATATTTGGCTCAGgttcatatct ... tctctatcagATTGGTATCTGGGCATACATCTGGGTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCTGTCAACGTGGCTGTATATTTGGCTCAGgttcatatctgatttttagcttcttttttttttaattcccgtttatgttgtagttgctgagtttcctgagatccatttatatacatcttttgcaattatt
- - - - - - - - - - - AGCTGC