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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGAAATAAAGAAAGTGGGGAAGAAAGAGCATCACTTGTGGAAGAAGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATGgtaagtgaggaaaagttctgttaaaacatatgttttcataagtgaaacgatgataaagtagtccttgttgatatgtag

Basic information

species Arabidopsis thaliana
transcript AT4G18975.3
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116393000|gb|EG435592.1|EG435592
EST:     AGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATG                         CTCTCTGGACTCCCAAATGAAAAAGAGGCTGTTTATGGAGCTTTGAATAAA
genomic: AGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATGgtaagtgagg ... tgatatgtagCTCTCTGGACTCCCAAATGAAAAAGAGGCTGTTTATGGAGCTTTGAATAAA
EST: gi|116392998|gb|EG435590.1|EG435590
EST:     AGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATG                         CTCTCTGGACTCCCAAATGAAAAAGAGGCTGTTTATGGAGCTTTGAATAAA
genomic: AGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATGgtaagtgagg ... tgatatgtagCTCTCTGGACTCCCAAATGAAAAAGAGGCTGTTTATGGAGCTTTGAATAAA
EST: gi|164088688|gb|ES081044.1|ES081044
EST:     GGACAGAAAGCACTTAATCTTGTTCGAATG                         CTCTCTGGACTCCCAAATGAAAAAGAGGCTGTTTATGGAGCTTTGAATAAA
genomic: GGACAGAAAGCACTTAATCTTGTTCGAATGgtaagtgagg ... tgatatgtagCTCTCTGGACTCCCAAATGAAAAAGAGGCTGTTTATGGAGCTTTGAATAAA
EST: gi|116393001|gb|EG435593.1|EG435593
EST:     AGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATG                         CTCTCTGGACTCCCAAATGAAAAAGAGGCTGTTTATGGAGCTTTGAATAAA
genomic: AGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATGgtaagtgagg ... tgatatgtagCTCTCTGGACTCCCAAATGAAAAAGAGGCTGTTTATGGAGCTTTGAATAAA
EST: gi|116392999|gb|EG435591.1|EG435591
EST:     AGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATG                         CTCTCTGGACTCCCAAATGAAAAAGAGGCTGTTTATGGAGCTTTGAATAAA
genomic: AGAATGACTCTGCTGGGTCTGGACAGAAAGCACTTAATCTTGTTCGAATGgtaagtgagg ... tgatatgtagCTCTCTGGACTCCCAAATGAAAAAGAGGCTGTTTATGGAGCTTTGAATAAA