Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCATTGCTCCAAAGGCTTAGGCATCCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATTGTGACTGAATATTTGCCCAGGgtactgactttctctgataaatttgaaattatttttgcatttagtttcacgaaaccaagatctcatttgatatattcttcag

Basic information

species Arabidopsis thaliana
transcript AT4G18950.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G18950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G29520.1 (Glycine max), 5'ss of exon 5
TGCATTGCTCCAAAGGCTTAGGCATCCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATTGTGACTGAATATTTGCCCAGGgtactgactttctctgataaatttgaaattatttttgcatttagtttcacgaaaccaagatctcatttga--tatattcttcag----------------------------------------------
|||  || |||| |   |  ||||||||||  | || || ||||| |||||||| ||||| ||||  ||||||||||||||||| |||||| | |||| |||  |   |    |   |  ||     ||  ||||||    |    |   |||         |  |||||  | ||    | |                                               
TGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACGGAATATCTTCCCAAGgttttttgtcctacaatttcatggaccatggtttttggggctttgcttgggaattgggatgtttgtttgaagtttaacagtaaattgatagaaaatgatccgttcttaatcttatccccatgttgtgcag

upper sequence: AT4G18950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G09490.2 (Glycine max), 5'ss of exon 5
TGCATTGCTCCAAAGGCTTAGGCATCCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATTGTGACTGAATATTTGCCCAGGgtactgactttctctgataaatttgaaattattt-ttgcatttagtttcacgaaaccaagatctcatttgatatattcttcag-----------------------------------------------
|||  || |||| | | |  ||||||||||  | || || ||||| |||||||| ||||| ||||  ||||||||||||||||| |||||| | |||| |||| |   |    | | || ||   | ||||||| |||   || | ||    |     |  | |  ||  |  |   |   |                                                
TGCTCTGTTCCAGAAGATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATTGTGACAGAATATCTTCCCAAGgtattttgtcctacagttacatggaacattatttcttgggctttgcttgggaattttgatgtttgtttgaagtttaacagtaatgtgatagaaaatattccgttcttaatcttatccccatgttgtgcag

upper sequence: AT4G18950.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv10s0003g02060.t01 (Vitis vinifera), 5'ss of exon 5
TGCATTGCTCCAAAGGCTTAGGCATCCAAACATTGTGCAGTTTCTTGGTGCTGTAACCCAAAGTAACCCAATGATGATTGTGACTGAATATTTGCCCAGGgtactgactttc--tctgataaatt---tgaaattatttttgcatttagtttcacgaaaccaagatctcatttgatatattcttcag---------------
||||||||| || | | |  | ||||| ||  | || |||||||| ||||||||||| |||||||  ||||||||||||||||| |||||||| |||| |||  |     ||  || ||| | |    |||||| |  ||    |   | | |  | |||    | || ||| | | | |||||                  
TGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATTGTGACAGAATATTTACCCAAGgtttttttcatcattcagattactagaatgaaataaaattaatgtaatgatccttggaactgtta-ctgattagctgt-ttcttggatctttgattttccta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164189719|gb|ES125108.1|ES125108
EST:     GTAACCCAAAGTAACCCAATGATGATTGTGACTGAATATTTGCCCAGG                         GGGGATTTGCGTGTAATTGCTCAAACGAAAAGGACAATTGAAACCAGCTAC
genomic: GTAACCCAAAGTAACCCAATGATGATTGTGACTGAATATTTGCCCAGGgtactgactt ... tattcttcagGGGGATTTGCGTG-AATTGCTCAAACGAAAAGGACAATTGAAACCAGCTAC