1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTGGATCCTCTAAGAGCTATGGTTGCCGGTTCTCCTCTTGAAGATGCTCGTCATCTTGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACATgtaatcatcttaagatcttagttctatgatgatgttggctattttattttgtaatgtaagttaaaacttaaaagcaaaacag
species | Arabidopsis thaliana |
transcript | AT4G18060.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCATCTTGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACAT GCAACGGAAGTCTCTAGACGGEST: gi|163966476|gb|ES185368.1|ES185368
genomic: GTCATCTTGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACATgtaatcatct ... agcaaaacagGCAACGGAAGTCTCTAGACGG
EST: CAGCCGCATGAGACAAGAAGCAGAGACACAT GCAACGGAAGTCTCTAGACGGCAAGCACGTGTAAGAGAAGCTCCGATTCCAEST: gi|164095960|gb|ES064781.1|ES064781
genomic: CAGCCGCATGAGACAAGAAGCAGAGACACATgtaatcatct ... agcaaaacagGCAACGGAAGTCTCTAGACGGCAAGCACGTGTAAGAGAAGCTCCGATTCCA
EST: CAAGAAGCAGAGACACAT GCAACGGAAGTCTCTAGACGGCAAGCACGTGTAAGAGAAGCTCCGAEST: gi|125221645|gb|EL235730.1|EL235730
genomic: CAAGAAGCAGAGACACATgtaatcatct ... agcaaaacagGCAACGGAAGTCTCTAGACGGCAAGCACGTGTAAGAGAAGCTCCGA
EST: CTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACAT GCAACGGAAGTCTCTAGACGGCAAGCACGTGTAAGAGAAGCTCCGATTCCAEST: gi|86058789|gb|DR354546.1|DR354546
genomic: CTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACATgtaatcatct ... agcaaaacagGCAACGGAAGTCTCTAGACGGCAAGCACGTGTAAGAGAAGCTCCGATTCCA
EST: GTCATCTTGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACAT GCAACGGAAGTCTCTAGACGGCAAGCACGTGTAAGAGAAGCTCCGATTCCAEST: gi|124955061|gb|EL030103.1|EL030103
genomic: GTCATCTTGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACATgtaatcatct ... agcaaaacagGCAACGGAAGTCTCTAGACGGCAAGCACGTGTAAGAGAAGCTCCGATTCCA
EST: GTCATCTTGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACAT GCAACGGAAGTCTCTAGACG
genomic: GTCATCTTGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACATgtaatcatct ... agcaaaacagGCAACGGAAGTCTCTAGACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGATCCTCTAAGAGCTATGGTTGCCGGTTCTCCTCTTGAAGATGCTCGTCATCTTGCTCAACGTTACAGCCGCATGAGACAAGAAGCAGAGACACATgtaatcatcttaagatcttagttctatgatgatgttggctattttattttgtaatgtaagttaaaacttaaaagcaaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC