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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAAGATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTgtaagttgacataagatagtttcatatataggtgtttattgaagcttttgtgaagagatttattgattctggtctgccattttttctcag

Basic information

species Arabidopsis thaliana
transcript AT4G17615.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G17615.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA17G15900.1 (Glycine max), 5'ss of exon 3
ATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAAGATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTgtaagttgacataagatagtttcatatataggtgtttattgaagcttt--tgtgaagagatttattgattc-------tggtctgccattttttctcag
 | |||||||| ||       |||||| | || ||||  |||||||| ||||| ||||||||||||||||| ||||||||  || ||||||| |||| ||||||||| |  |   |    ||     ||   |  ||    |  ||||  ||| |    | || ||||| |       |||| ||  || || | ||||
TTATTTGATGTCAAGAAGCTTGGAGTCGTTGACTTCGAAGACTTTGTCAGATCTCTCAATGTTTTCCACCCAAATGCTTCATTAAAAGACAAGATAGCTTgtaagttaaagttcaaatccttagcccatgatttattggaaatactttactgtaatctaagttgttgatacattaggttggtttggtatcttgtttcag

upper sequence: AT4G17615.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA05G05580.1 (Glycine max), 5'ss of exon 5
ATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAAGATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTgtaagttgacataaga-----tagtt--tcatatataggtgtttattgaagcttttgtgaagagattt-attgatt---ctggtctgccattttttctcag
 | |||||||| ||    || |||||||| || ||||  |||||||| ||||| || |||||||||||||| ||||| ||  |||||||||| |||| ||||||||| |  |   |      |  |  | || ||| ||   || || |   || | | |   | | | ||  |||    |||| ||  || || | ||||
TTATTTGATGTCAAGAAGAAGGGAGTCATTGACTTCGAAGACTTTGTTAGATCTCTGAATGTTTTCCACCCAAATGCATCATTAGAAGACAAGATAGCTTgtaagttaaagttcaaatcctcaactcgtgatttatcggaaattctttaccgttatctaagttgttctgatacattaggttggtttggtatcttgtttcag

upper sequence: AT4G17615.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0236g00150.t01 (Vitis vinifera), 5'ss of exon 5
ATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAAGATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTgtaagttgacataagat---------------agtttcatatataggtgt----ttat-tgaagcttttgtgaagagattt--attgattctg-gtctgccattttttctcag
 | ||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||||||| || |||||  | | |||||||||||| ||||||||||| || | | ||               | || |||  |  || ||    |||| || |  | || | |  | ||||  ||  ||  ||  | || |||| | |  |||
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatacatcttgtatttgacattatattgcag

upper sequence: AT4G17615.2 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv02s0236g00140.t01 (Vitis vinifera), 5'ss of exon 5
ATGTTTGATGTTAAACGAAAAGGAGTCATCGATTTCGGGGACTTTGTAAGATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTgtaagttgacataagat---------------agtttcatatataggtgt----ttat-tgaagcttttgtgaagagattt--attgattctg-gtctgccattttttctcag
 | ||||||||||| || || |||||||| ||||| || |||||||| || ||||| ||||||||||| || |||||  | | |||||||||||| ||||||||||| || | | ||               | || |||  |  || ||    |||| || |  | || | |  | ||||  ||  ||  ||  | || |||| | |  |||
CTTTTTGATGTTAAGCGGAAGGGAGTCATTGATTTTGGTGACTTTGTCAGGTCACTAAATGTTTTCCATCCAAATGCCCCACAAGAAGACAAAATTGATTgtaagtttacttgacattttaggattgctttgaattgcatgaactggagtactgttatgtgcaattgttctcagtatattttaatgcatcttgtatttgacattatattgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058729|gb|DR354486.1|DR354486
EST:     TCACTCAATGTTTTCCCACCCCA-TGCTTCTCTAGAAGACAAAATAGATT                         TTACGTTTAGGCTTTACGACATGGACTGCACGGGTTACATTGAACGACAAG
genomic: TCACTCAATGTTTTCC-ACCCCAATGCTTCTCTAGAAGACAAAATAGATTgtaagttgac ... tttttctcagTTACGTTTAGGCTTTACGACATGGACTGCACGGGTTACATTGAACGACAAG
EST: gi|86077867|gb|DR373624.1|DR373624
EST:     ATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGMCAAAATAGATT                         TTACGTTTAGGCTTTACGACATGGACTGCACGGGTTACATTGAACGACAAG
genomic: ATCACTCAATGTTTTCCACCCCAATGCTTCTCTAGAAGACAAAATAGATTgtaagttgac ... tttttctcagTTACGTTTAGGCTTTACGACATGGACTGCACGGGTTACATTGAACGACAAG