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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGCTTGGATTAGGGTATTGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtcagcttttcttctagccatttattttatagtttgggcttgcttagaaaattgaaatatcttgttgaacag

Basic information

species Arabidopsis thaliana
transcript AT4G14716.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125271657|gb|EL285742.1|EL285742
EST:     CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCGTG
genomic: CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTG
EST: gi|116403021|gb|EG445613.1|EG445613
EST:     CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
genomic: CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
EST: gi|124882644|gb|EH961546.1|EH961546
EST:     CTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCG
genomic: CTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCG
EST: gi|125087037|gb|EL146309.1|EL146309
EST:     TGACAACTATATCAAG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
genomic: TGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
EST: gi|125014829|gb|EL087098.1|EL087098
EST:     CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCGTGGGTG
genomic: CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTG
EST: gi|125022400|gb|EL094669.1|EL094669
EST:     ACAACTATAACAAG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
genomic: ACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
EST: gi|19741175|gb|AU226528.1|AU226528
EST:     CTGT-GACTCTGACAACTATATC-AG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
genomic: CTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
EST: gi|125265659|gb|EL279744.1|EL279744
EST:     CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCG
genomic: CTGCTGGGATCTATCATCGCTTCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCG
EST: gi|124819530|gb|EH904396.1|EH904396
EST:     TCACTGTGGACTCTGACAACTATATCAAG                         GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA
genomic: TCACTGTGGACTCTGACAACTATATCAAGgtgcaatgtc ... tgttgaacagGCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCA