1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TGAAGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgttagcttcttcagagtggttaattcatcatatatatatttggttgattagaaaattgaaatatcttgttgagcag
species | Arabidopsis thaliana |
transcript | AT4G14710.4 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCAEST: gi|86082287|gb|DR378046.1|DR378046
genomic: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
EST: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCAEST: gi|124720239|gb|EH811641.1|EH811641
genomic: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
EST: TGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGAEST: gi|124889874|gb|EH968776.1|EH968776
genomic: TGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGA
EST: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG GCAATGCGGCTTT-CGTGGGTGAACEST: gi|86080820|gb|DR376577.1|DR376577
genomic: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAAC
EST: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCAEST: gi|164105215|gb|ES067936.1|ES067936
genomic: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
EST: TAGACTCAGACAACTATATCAAG GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCAEST: gi|124727145|gb|EH818547.1|EH818547
genomic: TAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
EST: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAG GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGEST: gi|125258671|gb|EL272756.1|EL272756
genomic: CTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCG
EST: CGCTTCACCGTAGACTCAGACAACTATATCAAG GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCAEST: gi|125294180|gb|EL308265.1|EL308265
genomic: CGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
EST: TCAGACAACTATATCAAG GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
genomic: TCAGACAACTATATCAAGgtgcaatgtt ... tgttgagcagGCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAAGCTTGGATTAGAGTATGGGTAAAGAAGGGAGGTATGATAGTCTTACCTGCTGGAATATATCATCGCTTCACCGTAGACTCAGACAACTATATCAAGgtgcaatgttagcttcttcagagtggttaattcatcatatatatatttggttgattagaaaattgaaatatcttgttgagcag
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