1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGAGTTCCTTATCCAGCTCTACCAAAGCGTGATAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTATCAGAGCGGgtaagccttttgatatacaagtctttttttctttaagacgggcatagattttgattttaaagcaaattcaaaacaaatgcag
species | Arabidopsis thaliana |
transcript | AT4G14500.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTATCAGAGCGG TTGAATCCCGAAAAGGAGATGGACAGCAAACGGCEST: gi|124769227|gb|EH859357.1|EH859357
genomic: TAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTATCAGAGCGGgtaagccttt ... acaaatgcagTTGAATCCCGAAAAGGAGATGGACAGCAAACGGC
EST: TAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTATCAGAGCGG TTGAATACCCGEST: gi|86082307|gb|DR378066.1|DR378066
genomic: TAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTATCAGAGCGGgtaagccttt ... acaaatgcagTTGAAT-CCCG
EST: TAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTATCATAGCGG TTGAATCCCGAAAAGGAGATGGACWGCAAACGGCTTGTGAAGTTTCCCTTG
genomic: TAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTATCAGAGCGGgtaagccttt ... acaaatgcagTTGAATCCCGAAAAGGAGATGGACAGCAAACGGCTTGTGAAGTTTCCCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGTTCCTTATCCAGCTCTACCAAAGCGTGATAAGCCAAGGCGTGTTGAGCTTTATTTCTCAAGTTGGGTTATCAGAGCGGgtaagccttttgatatacaagtctttttttctttaagacgggcatagattttgattttaaagcaaattcaaaacaaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - GAGCTT