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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAGgttgggtgttggttttgctatagtttaaagcctttgggatgattaaaacatcagtatactgatagtttttcttgtctttttatacatgttttgcatgtctag

Basic information

species Arabidopsis thaliana
transcript AT4G13730.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G13730.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G11760.1 (Glycine max), 5'ss of exon 5
GACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAGgttgggtgttggttttgctatagtttaaagcctttgggatgattaaaacatcagtatactgatagtttttcttgtctttttatacatgtttt---gcatgtctag
|| |||||  |  | || ||||| || || ||||| | ||| |||||||| |||||||||||||||||||| |||||   | ||||||||||||||||||||     ||  |||  ||  |  || |  |       | | | ||  | |     |      |   ||  ||   | ||  ||  | |      | || |  ||
GATACAGAGATCATAGATCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtttttcctttatttgtcttgaaatttatacaaactccaagttcaagtctttttcttgagtgaacccttgattaattattactatttttcgggggggattttcag

upper sequence: AT4G13730.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G28660.1 (Glycine max), 5'ss of exon 5
GACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAGgttgggtgttggttttgctatagtttaaagcc-----tttgggatgattaaaacatcagtatactgatagtttttcttgtctttttatacatgttttgcatgtctag
|| |||||  |  | || ||||| || || ||||| | ||| |||||||| |||||||||||||||||||| |||||   | |||||||||||||||||||    | || || |||  ||   |  || |      ||   |    ||    ||| |      ||||  || || ||    ||||   |  |    |||| |  ||
GATACAGAGATCATCGACCAAATTGACCGAGATGTAAAGCGCACTCATCCTGATATGCACTTTTTCTCTGGTGATTCCCAATTTGCAAAATCTAATCAGgtcctttatttgtcttgaaattcatccaaactccaaattcaagtcttttctgccatgaaccctttgat--ttattattactatttttcgcgggggg-gcattttcag

upper sequence: AT4G13730.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G00430.2 (Glycine max), 5'ss of exon 5
GACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAGgttgggtgttggttttgctatagtttaaagcctttgggatgattaaaacatcagtatactgatagtttttcttgtctttttatacatgttttgcatgtctag
||||||||  |  | || || || || || ||||| |  ||||||||||||||||| ||||| |||||||| |||||     ||||||||||||||||||||     |   |||   | || |||  |   ||   |   | |    | |   | | ||     ||||   | ||   || | |   |||||||       
GACACAGAGATCATAGACCAGATTGACCGAGATGTCAATCGTACTCATCCAGATATACACTTCTTCTCTGGTGATTCTCTTTTTGCAAAATCTAATCAGgttcttcctctatttatttttattttcgaa--ttcatgccaactcggtcct---ttttcttgccattttgactttcaacttttccggattttgcag------

upper sequence: AT4G13730.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G36520.1 (Glycine max), 5'ss of exon 5
GACACAGAAGTTTTGGAACAAATAGAACGCGATGTGATGCGTACTCATCCAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAGgttgggtgttggttttgctatagtttaaagcctttgggatgattaaaacatcagtatactgatagtttttcttgtctttttatacatgttttgcatgtctag
||||||||  |  | || || || || || ||||| | ||||||||||||||||||  |||| |||||||| |||||     ||||||||||||||||||||         ||   ||||  |||||     ||   |   | | | || |   || ||  |  ||    || |   |||  || | |   |  | |  ||
GACACAGAGATCATAGAGCAGATTGACCGAGATGTCAAGCGTACTCATCCAGATATAGACTTCTTCTCTGGTGATTCTCATTTTGCAAAATCTAATCAGgttc--------ttcctctattttttaattttattttcaaattcataccaactcaatcctttttcttgccattttgactttcaacttttccggatttttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076731|gb|DR372488.1|DR372488
EST:     CAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAG                         GATGCTTTGAAGAACATTTTGACTATTTTCGCAAAGTTGAATCCTGGCATC
genomic: CAGATATGCACTTTTTCTCTGGGGATTCAGCAGTTGCAAAATCTAATCAGgttgggtgtt ... gcatgtctagGATGCTTTGAAGAACATTTTGACTATTTTCGCAAAGTTGAATCCTGGCATC