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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAGgtatttgtttatccagatgcacacttattggcttgcaaataactaatcttctcctcttaattcaatcttcatag

Basic information

species Arabidopsis thaliana
transcript AT4G10030.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125289117|gb|EL303202.1|EL303202
EST:     TTGGCTCATGAATTCCCAACGTGGCAG                         TTTCTATTGGTAGACCTGCGTTGCCATGGGGATTCAACATCTCTCAAGAAG
genomic: TTGGCTCATGAATTCCCAACGTGGCAGgtatttgttt ... atcttcatagTTTCTATTGGTAGACCTGCGTTGCCATGGGGATTCAACATCTCTCAAGAAG
EST: gi|86019776|gb|DR315522.1|DR315522
EST:     GCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAG                         TTTCTATTGGTAGACCTGCGTTGCCATGGGGATTCAACATCTCTCAAGAAG
genomic: GCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAGgtatttgttt ... atcttcatagTTTCTATTGGTAGACCTGCGTTGCCATGGGGATTCAACATCTCTCAAGAAG
EST: gi|86019779|gb|DR315525.1|DR315525
EST:     GCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAG                         TT-CTATTGGTAGA
genomic: GCACTTTTGCTCGTAGATTGGCTCATGAATTCCCAACGTGGCAGgtatttgttt ... atcttcatagTTTCTATTGGTAGA