Sequence
atgc intronic sequence ATGC exonic sequenceTTCACAAGAGAATTATCATATATGTCCTTACAGTGGGTGTGTGAAGAGATATGCTCATGAATACAAGCTAAAGAACCACGTTGCTGCCTACCATGAAAAGgtatcattactcatttgattactcattcgatagagtgtcatgaaaatatgttttttttcttgtgctaagacagagcagctccttagtcagagtctagctc...
Basic information
species | Arabidopsis thaliana |
transcript | AT4G06634.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G06634.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G30150.1 (Glycine max), 5'ss of exon 5
TTCACAAGAGAATTATCATATATGTCCTTACAGTGGGTGTGTGAAGAGATATGCTCATGAATACAAGCTAAAGAACCACGTTGCTGCCTACCATGAAAAGgtatcattac-tcatttgattactcattcgatagagtgtcatgaaaatat----gttttttttcttgtgctaagacagagcagctccttagtcagagtctagctc
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TTCCCAAGAGAACTATCATATCTGCCCATATCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGgttgggtagtgtttcctatttgtgttgctggtacattttccttatttttttaccactcagtctattaatattatatgatgcattttattatgtaaagcat-----
upper sequence: AT4G06634.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G13310.1 (Glycine max), 5'ss of exon 4
TTCACAAGAGAATTATCATATATGTCCTTACAGTGGGTGTGTGAAGAGATATGCTCATGAATACAAGCTAAAGAACCACGTTGCTGCCTACCATGAAAAGgtatcattac-tcatttgattactcattcgatagagtgtcatgaaaatatgttttttttcttgtgctaa--gacagagcagctccttagtcagagtctagctc
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TTCTCAAGAGAACTATCATATCTGCCCATATCCAGATTGTGGAAAGAGATATGCTCATGAATACAAGCTAAAGAATCACATTGCATCTCATCATGAAAAGgttgggtagtgtttcctatttgtgtagctggtacactttccttatttttt-taccactcagtctattaattaatgatgcatgttatcatgtaaagcatctc--
upper sequence: AT4G06634.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv12s0035g00660.t01 (Vitis vinifera), 5'ss of exon 5
TTCACAAGAGAATTATCATATATGTCCTTACAGTGGGTGTGTGAAGAGATATGCTCATGAATACAAGCTAAAGAACCACGTTGCTGCCTACCATGAAAAGgt-atcattactcatttg--attactcattcgatagagtgt-catgaaaatat-gttttttttcttgtgctaagacagagcagctccttagtcagagtctagctc
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TTCACAAGAGAACTACCATATCTGCCCCTATCCAGATTGTGGAAAGAGATATGCTCATGAGTACAAGTTAAAGAACCACATCATGTCTCACCATGAAAAGgttggtaccacacccttacaatccttttttttcgaaaatattcattgttgcattgttttgtattttcttctagtttct--cagttaccaacatagattttag---Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164136261|gb|ES000211.1|ES000211EST: TCATGAATACAAGCTAAAGAACCACGTTGCTGCCTACCATGAAAAG AATGGTGGTGGAGAGACTCCCAAA
genomic: TCATGAATACAAGCTAAAGAACCACGTTGCTGCCTACCATGAAAAGgtatcattac ... tgtttaacagAATGGTGGTGGAGAGACTCCCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTCACAAGAGAATTATCATATATGTCCTTACAGTGGGTGTGTGAAGAGATATGCTCATGAATACAAGCTAAAGAACCACGTTGCTGCCTACCATGAAAAGgtatcattactcatttgattactcattcgatagagtgtcatgaaaatatgttttttttcttgtgctaagacagagcagctccttagtcagagtctagctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcattcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagacaga