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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATGCGTCTGCTAATTCAATTTATGAAGCTTTTTTACCTGACACGTGCTCTAAGCCTGGACCTGATGTTAATCATGACCAGCGTATGAGATTCATTAGgtcagattctaaaacaaaatactctgtgacaggacaaatctattgctgttgtttgtatagtgacttactcaaaatctttatttag

Basic information

species Arabidopsis thaliana
transcript AT4G05330.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G13700.1 (Glycine max), 5'ss of exon 5
GAAATGCGTCTGCTAATTCAATTTATGAAGCTTTTTTACCTGACACGTGCTCTAAGCCTGGACCTGATGTTAATCATGACCAGCGTATGAGATTCATTAGgtcagattctaaaacaaaatactctgtgacaggacaaatctattgctgttgtttgtatagtgacttactc-aaaatctttatttag-----------------
||||||| ||||||||||||||||||||||||| | | |||||    |   | || |||||||| |||| |  |||||| ||||||   | ||||||  ||| |||   |      | |||| |  || ||    | ||||  || | || |   | |  ||  | | |   |||  ||||| | |                 
GAAATGCTTCTGCTAATTCAATTTATGAAGCTTATATTCCTGAAGGATATACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAATTCATACGgttagaca-tgttttcacatacacaatg-caccgtatatctgctgttcttatc-atcttttggttcattttgaaaaatttatcttgtcaacatgaattaggta

upper sequence: AT4G05330.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G02830.1 (Glycine max), 5'ss of exon 5
GAAATGCGTCTGCTAATTCAATTTATGAAGCTTTTTTACCTGACACGTGCTCTAAGCCTGGACCTGATGTTAATCATGACCAGCGTATGAGATTCATTAGgtcagattctaaaacaaaatactctgtgacaggacaaatctattgctgttgtttgtatagtgacttactcaaaatctttatttag------------------
||||||  ||||||||||||||||||||||||| | | |||||    |   | || |||||||| |||| |  |||||| ||||||   |  |||||  ||| |||   |      | |||| |  || ||    | ||||   | | || |   | |  ||  | | |   ||  ||||| | |                  
GAAATGTTTCTGCTAATTCAATTTATGAAGCTTATATTCCTGAAGGATATACGAAACCTGGACCAGATGCTGGTCATGAGCAGCGTTCAAAGTTCATACGgttagaca-tgttttcatatacacaatg-cactgtatatcttccgttcttatc-atcttttggttcattttgaaattttatcttgtcaccatgaagtaggtaa
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164227834|gb|ES009253.1|ES009253
EST:     TGATGTTAATCATGACCAGCGTATGAGATTCATTAG                         GGCAAAATATGAACTGCAAGAGTTTCTGAAACCAAGCTTGCGGATTACATC
genomic: TGATGTTAATCATGACCAGCGTATGAGATTCATTAGgtcagattct ... ctttatttagGGCAAAATATGAACTGCAAGAGTTTCTGAAACCAAGCTTGCGGATTACATC