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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGCACAATGCTGGTGATGGGATTGGAAGAAAGAAGATTTATGTTAGACTTCTTCTTAGTATTGATCGTAGGGAAACAACAGAGTCCGCAATGGAAACTgttagtgtttcaaaacaagctaagctactcagaatacttaaaagactaatgcagaaaacatttgatactctccttttttctttaaag

Basic information

species Arabidopsis thaliana
transcript AT4G04880.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G04880.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G137724_T01 (Zea mays), 5'ss of exon 5
ACTGCACAATGCTGG-TGATGGGATTGGAAGAAAGAAGATTTATGTTAGACTTCTTCTTAGTATTGATCGTAGGGAAACAACAGAGTCCGCAATGGAAAC----Tgttagtgt-ttcaaaacaagctaagctactcag--aatacttaaaag-actaatgcagaaaacatttgatactctccttttttctttaaag-
  |  |   |  ||| || ||  |     | ||||||||| |||||||| || |||||||||||||||||  | || |||||   | | ||| |||| ||    ||||| | | ||| | || | | ||  | || |   |||||      | ||  ||  ||||        | |   |   |||  | |      
-TTCTAAGCTTTTGGATGGTGTCACAAAGAAAAAGAAGATATATGTTAGGCTCCTTCTTAGTATTGATCGCCGCGAGACAACTTCGGCTGCATTGGATACCgtatgttaatatcttccagaccaaccaatattctgaactaatacaggtgggcacctattgagaatctgcacaaaatcatttgtttcccctggccag