Sequence
atgc intronic sequence ATGC exonic sequenceTCTCAGAAAAGCTTCGTATGGGTAACATGGCCTGTGAAAATGAAGTTGTCGTGGACCTGTTTGCTGGAATTGGATATTTTGTTCTCCCATTTCTTGTGAGgtatatgccattattgaataaacgagaagagaaagtggttttatacaatcaaaagtcaatactttattagatcgcatgcaactacaatgcattcttaattgacatttacag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G04670.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G04670.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os07g33100.1 (Oryza sativa), 5'ss of exon 7
TCTCAGAAAAGCTTCGTATGGGTAACATGGCCTGTGAAAATGAAGTTGTCGTGGACCTGTTTGCTGGAATTGGATATTTTGTTCTCCCATTTCTTGTGAGgtatatgccattattgaataaacgagaagagaaagtggttttatacaatcaaaagtcaatactttattagatcgcatgcaactacaatgcattcttaattgacatttacag
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GGTCTGAGAAGCTTCGCATGGGGAAGCTTGATTGTAGGGATGAAGTGGTGGTGGACTTGTTTGCAGGGATTGGATACTTTGTTCTACCATTTCTTGTGAAgtatgtt----------atatacgata---gcccttggtta---actgctaaatgttaataagtgattttacaaaataagtgttccctttttttatag-------------
upper sequence: AT4G04670.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G154574_T01 (Zea mays), 5'ss of exon 7
TCTCAGAAAAGCTTCGTATGGGTAACATGGCCTGTGAAAATGAAGTTGTCGTGGACCTGTTTGCTGGAATTGGATATTTTGTTCTCCCATTTCTTGTGAGgtatatgccatt-----attgaataaacgagaagagaaagtggttttatacaatcaaaagtcaatactttattagatcgcatgcaactacaatgcattcttaattgacatttacag
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GTTCAGAGAAACTTCGCATGGGACAGCTAAACTGCAGAGATGAGGTGGTCGTGGATTTGTTTGCTGGAATTGGATATTTTGTTCTTCCATTTCTTGTGAAgtacattctctttagcccttggtcaaac-acttctgattctgattttatcccctctaaaa--agtattattcttaatatcttactcttgcag------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116474296|gb|EG516888.1|EG516888EST: GTGGACCTGTTTGCTGGAATTGGATATTTTGTTCTCCCATTTCTTGTGAG GGCATAAGCAAAGCTAGTATATGCTTGTGAGTGGAATCCCCATGCTATTGA
genomic: GTGGACCTGTTTGCTGGAATTGGATATTTTGTTCTCCCATTTCTTGTGAGgtatatgcca ... acatttacagGGCAAAAGCAAAGCTAGTATATGCTTGTGAGTGGAATCCCCATGCTATTGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTCAGAAAAGCTTCGTATGGGTAACATGGCCTGTGAAAATGAAGTTGTCGTGGACCTGTTTGCTGGAATTGGATATTTTGTTCTCCCATTTCTTGTGAGgtatatgccattattgaataaacgagaagagaaagtggttttatacaatcaaaagtcaatactttattagatcgcatgcaactacaatgcattcttaattgacatttacag
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