1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAGAATGTGAAGACACTTCATGAATACAAAGGTCATGCTGATAATTTCATCTGCTCTGTTATTCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAGgttcttgcatttttaatctttcactaattttcacttcatttacatgttatggtaattattttgtggagttttttacattatgaactttttctgttttggtgtttttttagataacctattttagagaagatatttatttgactgaataaatttgctctttatgaatattaaaacatttatatacatatgttatgtag
species | Arabidopsis thaliana |
transcript | AT4G02290.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAG GTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAAEST: gi|164215741|gb|ES118732.1|ES118732
genomic: TCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAGgttcttgcat ... tgttatgtagGTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAA
EST: GCTCCTTTCTCTTCTACTCAGTATACACCAG GTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAAEST: gi|163968455|gb|ES183396.1|ES183396
genomic: GCTCCTTTCTCTTCTACTCAGTATACACCAGgttcttgcat ... tgttatgtagGTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAA
EST: GTTATTCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAG GTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAA
genomic: GTTATTCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAGgttcttgcat ... tgttatgtagGTGGATTATTGTTTAAAATGGCAGACGCCAACATGCAATACGTGACGTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAATGTGAAGACACTTCATGAATACAAAGGTCATGCTGATAATTTCATCTGCTCTGTTATTCCTGGAGCTCCTTTCTCTTCTACTCAGTATACACCAGgttcttgcatttttaatctttcactaattttcacttcatttacatgttatggtaattattttgtggagttttttacattatgaactttttctgttttggtgtttttttagataacctattttagagaagatatttatttgactgaataaatttgctctttatgaatattaaaacatttatatacatatgttatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT