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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGgtaaattatcaatcttttgtgtatcttgtaacttttagatttgtctagaggaataaatggttttatgagattttgtggttttggtttag

Basic information

species Arabidopsis thaliana
transcript AT4G01610.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164022316|gb|ES112007.1|ES112007
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG
EST: gi|86059238|gb|DR354995.1|DR354995
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG
EST: gi|164234464|gb|ES093871.1|ES093871
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG
EST: gi|125084590|gb|EL144746.1|EL144746
EST:     TCTTAGATCAG
genomic: TCTTAGATCAG
EST: gi|125309021|gb|EL323106.1|EL323106
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG
EST: gi|125143582|gb|EL179982.1|EL179982
EST:     TCTTAGATCAG
genomic: TCTTAGATCAG
EST: gi|301501566|gb|HO207106.1|HO207106
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG
EST: gi|124839505|gb|EH923944.1|EH923944
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG
EST: gi|124902303|gb|EH976383.1|EH976383
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG
EST: gi|164090212|gb|ES176874.1|ES176874
EST:     TCTTAGATCAG
genomic: TCTTAGATCAG
EST: gi|125286343|gb|EL300428.1|EL300428
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG
EST: gi|125292705|gb|EL306790.1|EL306790
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG
EST: gi|86059237|gb|DR354994.1|DR354994
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG
EST: gi|124734944|gb|EH826346.1|EH826346
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG
EST: gi|125315213|gb|EL329298.1|EL329298
EST:     TTGGAAACATCTTAGATCAG
genomic: TTGGAAACATCTTAGATCAG