1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATGTTGACAGAAAAGAGTGATATCTATAGTTTTGGGATATTAATCATGGAGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAGgtaatttgttttatatctatcgcttcaaggtttcacaaaaccgtgttcttgattgtctcgttttgttag
species | Arabidopsis thaliana |
transcript | AT4G01330.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAG GTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGAAACCGEST: gi|125112381|gb|EL163480.1|EL163480
genomic: AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAGgtaatttgtt ... gttttgttagGTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGAAACCG
EST: AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAG GTGAATTTGGTTGAGTGGCTGAAAACAATGGEST: gi|125079846|gb|EL141674.1|EL141674
genomic: AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAGgtaatttgtt ... gttttgttagGTGAATTTGGTTGAGTGGCTGAAAACAATGG
EST: AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAG GTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGAAACCGAAGGT
genomic: AGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAGgtaatttgtt ... gttttgttagGTGAATTTGGTTGAGTGGCTGAAAACAATGGTTGGAAACCGAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATGTTGACAGAAAAGAGTGATATCTATAGTTTTGGGATATTAATCATGGAGATAATCACCGGAAGAAATCCTGTCGATTATAGTCGACCTCAAGGAGAGgtaatttgttttatatctatcgcttcaaggtttcacaaaaccgtgttcttgattgtctcgttttgttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA