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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGAGTTGTTTTATATCTAGCACAAGCTCTTGAATACTGCACCAGCAAAGGCCGTACTCTTTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATGAGgtatttattagttatatataagcagtttttcctctttcttcgaaacctgtctatgtttctatgctattccttcattctctgacgccttaaggggcttttaataag

Basic information

species Arabidopsis thaliana
transcript AT4G00710.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 5
ACGAGTTGTTTTATATCTAGCACAAGCTCTTGAATACTGCACCAGCAAAGGCCGTACTCTTTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATGAGgtatttattagttatatataagcagtttttcctctttcttcgaaacctgtctatgtttctatgctattccttcattctctgacgccttaaggggcttttaataag
| |||||||| || |||| ||||||||||| ||||||||||| |||||||| ||| |||| || || ||||||||||| ||  | ||| | ||||||||||||  | ||     | | ||  |  |||||   | |    | |    |   ||  ||  ||    ||   ||     | ||  |                     
AAGAGTTGTTCTACATCTTGCACAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTCAATGCATATAGAGTTCTTTTTGATGAGgtaagtttt-----tgtgtatcccctttttatacatgtcccaa----taattagattaataaaaaatgtgttagaattttgcag---------------------

upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA03G01300.2 (Glycine max), 5'ss of exon 5
ACGAGTTGTTTTATATCTAGCACAAGCTCTTGAATACTGCACCAGCAAAGGCCGTACTCTTTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATGAGgtatttattagttatatataagcagtttttcctctttcttcgaaacctgtctatgtttctatgctattccttcattctctgacgccttaaggggcttttaataag
| |||||||| || |||| ||||||||||| || |||||||| |||||||| ||| |||| || || ||||| ||||| ||  | ||| | ||||||||||||  | || ||            || |  ||| ||| |     || ||||  | |   ||   || |     | | | | |    ||    |            
AAGAGTTGTTCTACATCTTGCACAAGCTCTAGAGTACTGCACAAGCAAAGGGCGTGCTCTCTATCATGACCTTAATGCATATAGAGTTCTTTTTGATGAGgtaagtttttgt------------gtatcccctttttat-----acatgtccctataattagattaataaaaaaatgtgttagaattttgcag------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831461|gb|CK121145.1|CK121145
EST:     GCCGTACTCTTTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATGAG                         GAATGCAATCCAAGACTATCTACTTTTGGCTTGATGAAGAATAGTCGGGAT
genomic: GCCGTACTCTTTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATGAGgtatttatta ... ttttaataagGAATGCAATCCAAGACTATCTACTTTTGGCTTGATGAAGAATAGTCGGGAT
EST: gi|47831462|gb|CK121146.1|CK121146
EST:     GCCGTACTCTTTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATGAG                         GAATGCAATCCAAGACTATCTACTTTTGGCTTGATGAAGAATAGTCGGGAT
genomic: GCCGTACTCTTTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATGAGgtatttatta ... ttttaataagGAATGCAATCCAAGACTATCTACTTTTGGCTTGATGAAGAATAGTCGGGAT
EST: gi|164186839|gb|ES008889.1|ES008889
EST:     TTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATGAG                         GAATGCAATCCAAGACTATCTACTTTTGGCTTGATGAAGAATAGTCGGGAT
genomic: TTACCACGACCTCAATGCTTACCGGGTTTTGTTTGATGAGgtatttatta ... ttttaataagGAATGCAATCCAAGACTATCTACTTTTGGCTTGATGAAGAATAGTCGGGAT