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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAAGTCGTATCAAATGGAACTTCACCAAGTTCTTGGTCGGCAAAGATGGTCAAGTCATTGATCGTTATGGCACAACTGTTTCACCTCTATCCATCCAGgtctctaactctcttgttcttcatattctattataaaatcatatcactcttttatggcttacttcatgtttgttttctgcataacag

Basic information

species Arabidopsis thaliana
transcript AT3G63080.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164206645|gb|ES025507.1|ES025507
EST:     GTCAAGTAATTGATCGTTATGGCACAACTGTTTCACCTCTATCCATCCAG                         AAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGAACACGCACAG
genomic: GTCAAGTCATTGATCGTTATGGCACAACTGTTTCACCTCTATCCATCCAGgtctctaact ... tgcataacagAAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGAACACGCACAG
EST: gi|19742267|gb|AU227620.1|AU227620
EST:     GTCAAGTCATTGATCGTTATGGCACAACTGTTTCACCTCTATCCATCCAG                         AAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGAACACGCACAGAGATA
genomic: GTCAAGTCATTGATCGTTATGGCACAACTGTTTCACCTCTATCCATCCAGgtctctaact ... tgcataacagAAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGAACACGCACAGAGATA
EST: gi|19875832|gb|AU236663.1|AU236663
EST:     GTCAAGTCATTGATCGTTATGGCACAACTGTTTCACCTCTATCCATNCAG                         AAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGAACACGCACAGAGATA
genomic: GTCAAGTCATTGATCGTTATGGCACAACTGTTTCACCTCTATCCATCCAGgtctctaact ... tgcataacagAAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGAACACGCACAGAGATA
EST: gi|125109396|gb|EL161867.1|EL161867
EST:     GGCACAACTGTTTCACCTCTATCCATCCAG                         AAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGAACACGCACAGAGATA
genomic: GGCACAACTGTTTCACCTCTATCCATCCAGgtctctaact ... tgcataacagAAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGAACACGCACAGAGATA
EST: gi|124737059|gb|EH828461.1|EH828461
EST:     CGTTATGGCACAACTGTTTCACCTCTATCCATCCAG                         AAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGAACACGCACAGAGATA
genomic: CGTTATGGCACAACTGTTTCACCTCTATCCATCCAGgtctctaact ... tgcataacagAAAGACATCGAGAAAGCCCTTGCACAAGAATTGTGAACACGCACAGAGATA