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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAGCAAGTGGATAAGGGGGCACCGTGACTTGCCTTTGAAGCTTAACCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCTACCCCATTTATCCGgtattttattatcatatactcctttctactttttctgttcattatcatgttagtactttttttcttgagctagtcattgtttctgctgtaaatattcggcttaacgtttggattgaaaccttcgacacagaaatttgcttgccacagcccactgcctaacctatttaattgcag

Basic information

species Arabidopsis thaliana
transcript AT3G62120.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA03G38340.1 (Glycine max), 5'ss of exon 6
ACAGCAAGTGGATAAGGGGGCACCGTGACTTGCCTTTGAAGCTTAACCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCTACCCCATTTATCCGgtattttattatcatatactcctttctactttttctgttcattatcatgttagtactttttttcttgagctagtcattgtttctgctgtaaata--ttcggcttaacgtttggattgaaaccttcgacacagaaatttgcttgccacagcccactgcctaacctatttaattgcag
||   |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||| |||| |   |  |       |  |||  ||  | | |     |   |||||||     | |  |  | || | |  | ||||| | |  | || |  |||    | || |                                                                   
ACTCTAAGTGGATAAGGGGACATCGTGACTTGCCTTTGAAACTTAATCAGTGGTGCAATGTTGTCAGATGGGAGTTCAGCAACCCCACTCCATTCATCAGgtagtgagtagtt-----ttttttttcaccatgttttcctttggccatgtta-----tataatgattagttggctagtgtttatacaatgaacaatttcaaacttacata------------------------------------------------------------------

upper sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA19G40930.1 (Glycine max), 5'ss of exon 6
ACAGCAAGTGGATAAGGGGGCACCGTGACTTGCCTTTGAAGCTTAACCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCTACCCCATTTATCCGgtattttattatcatatactcctttctactttttctgttcattatcatgttagtactttttttct-tgagctagtcattgtttctgctgtaaatattcggcttaacgtttggattgaaaccttcgacacagaaatttgcttgccacagcccactgcctaacctatttaattgcag
||   |||||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||| || ||||| ||| |||| |   |  |  | |  |  ||| | ||||  |  |   ||    ||    |  | | |     | || | |    ||||| | |  | || | |                                                                              
ACTCTAAGTGGATAAGGGGACATCGTGACTTGCCTTTGAAACTTAATCAGTGGTGCAATGTTGTAAGATGGGAGTTCAGCAACCCCACTCCATTCATCAGgtagtgagtagtttttttttttttttttctttcaccttgttttcctttggccatgttatataaggattagttggctggtgtttatacaatgaacaatttc---------------------------------------------------------------------------

upper sequence: AT3G62120.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0005g02620.t01 (Vitis vinifera), 5'ss of exon 6
ACAGCAAGTGGATAAGGGGGCACCGTGACTTGCCTTTGAAGCTTAACCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGCAACCCTACCCCATTTATCCGgtattttattat-catatactcctttctacttt-ttctgttca-ttatcatgttag--tactttttttcttgagctagtcattgtttctgctgtaaatattcggcttaacgtttggattgaaaccttcgacacagaaatttgcttgccacagcccactgcctaacctatttaattgcag
|    |||||||||||||| ||||| |||||||||||||  |||||||| |||||||| |||||| | |||||||||||| | ||||||||||||||  |||| |||  | | ||| || |  ||| || ||| |||||||   || |   | ||   |    || || | |   |||  ||| |||      ||  | |                                                                               
ATTCTAAGTGGATAAGGGGACACCGGGACTTGCCTTTGAGACTTAACCAATGGTGCAACGTTGTTCGGTGGGAGTTCAGCCATCCTACCCCATTTATAAGgtagtttggtctgcatttattgatttttaatttgttctgttttcttgtttagctaacctgaggttattttaggattagagattatttgcaaattagcttt-------------------------------------------------------------------------------