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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACCTCTCCCATCAGGAGGCATTCTTACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGGTTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATATgtaagagtttagcttaatttttatcaaccacctcacatgttctgtgttaaatctggccttcttaattgatcatag

Basic information

species Arabidopsis thaliana
transcript AT3G61540.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61540.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv15s0046g02160.t01 (Vitis vinifera), 5'ss of exon 5
TACCTCTCCCATCAGGAGGCATTCTTACTCCTAAGGGTCTTCAAACTCTTGGTCTTTCTGGTTTAGGATCAAGTACTGGTTTTGAGCGCCTGCATTATATgtaagagtttagcttaatttttatcaaccacctcac------atgttctgtgttaaatctggccttcttaattgatcatag
| ||||| ||||| || |||||  | || || | |||||| ||   ||||||||||||| ||||||| || ||||| |||||||||||  |||| ||||||||||   |||  |  ||    ||      | | |       ||  |    ||| |   ||    |  ||  | | |||||
TGCCTCTTCCATCTGGGGGCATATTAACCCCAAGGGGTCTGCAGCTTCTTGGTCTTTCTTGTTTAGGCTCTAGTACCGGTTTTGAGCGATTGCACTATATgtaaggaattatttgtataccaatttgtttcttaagtacttgattcttcaagttgagcttgtttatactatctaaacatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164074862|gb|ES098746.1|ES098746
EST:     GTACTGGTTTTGAGCGCCTGCATTATAT                         GTTGGAGAGAGTATGGGATCCTATTTTAGTTACTGGAGCTACCAAAGTGTA
genomic: GTACTGGTTTTGAGCGCCTGCATTATATgtaagagttt ... ttgatcatagGTTGGAGAGAGTATGGGATCCTATTTTAGTTACTGGAGCT-CCAAAGTGTA