1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGAGTTGGATACGGTGCTCAAGGTTCTGGTTCCACACTCATCATGCCTTTCCTTGACAATCAGCTCAAGTCTCCAAGTCCTCTTTTGCTACCTAAACAGgtttgttgatattcttcattcgtgcttttggcgtttcgcattgtaaagataaaatgaatcgttctgttgcttatttgttcgtcttctgccaccatgtag
species | Arabidopsis thaliana |
transcript | AT3G60820.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCCTTGACAATCAGCTCAAGTCTCCAAGTCCTCTTTTGCTACCTAAACAG GATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTEST: gi|86020250|gb|DR315996.1|DR315996
genomic: TCCTTGACAATCAGCTCAAGTCTCCAAGTCCTCTTTTGCTACCTAAACAGgtttgttgat ... caccatgtagGATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACT
EST: GCTCAAGTCTCCAAGTCCTCTTTTGCTACCTAAACAG GATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTEST: gi|86020238|gb|DR315984.1|DR315984
genomic: GCTCAAGTCTCCAAGTCCTCTTTTGCTACCTAAACAGgtttgttgat ... caccatgtagGATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACT
EST: TCCTTGACA-TCAGCTCAAGTCTCCAAGTCCTCTTTTGCTACCTAAACAG GGAT-CAAACACGCCCCTTTCCGAAGCTGAAAGCAGT-GACTTGEST: gi|125094587|gb|EL152029.1|EL152029
genomic: TCCTTGACAATCAGCTCAAGTCTCCAAGTCCTCTTTTGCTACCTAAACAGgtttgttgat ... caccatgtagG-ATTCAAACACGCCCCTTTCCGAAGCTGAA-GCAGTTGACTTG
EST: CCTTGACAATCAGCTCAAGTCTCCTAAGTCCTCTTTTGCTACCTAAACAG GATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTEST: gi|124986015|gb|EL058564.1|EL058564
genomic: CCTTGACAATCAGCTCAAGTCTCC-AAGTCCTCTTTTGCTACCTAAACAGgtttgttgat ... caccatgtagGATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACT
EST: TACCTAAACAG GATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACTEST: gi|164212305|gb|EL977040.1|EL977040
genomic: TACCTAAACAGgtttgttgat ... caccatgtagGATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACT
EST: CCTTGACAATCAGCTCAAGTCTCCAAGTACCTCTTTTGCTACCTAAACAG GATTCAAACACGEST: gi|124790177|gb|EH879856.1|EH879856
genomic: CCTTGACAATCAGCTCAAGTCTCCAAGT-CCTCTTTTGCTACCTAAACAGgtttgttgat ... caccatgtagGATTCAAACACG
EST: TACCTAAACAG GATTCAAACACGCCCCTTTCCGAAGCNGAAGCAGTTGACTTGGTTAAAACT
genomic: TACCTAAACAGgtttgttgat ... caccatgtagGATTCAAACACGCCCCTTTCCGAAGCTGAAGCAGTTGACTTGGTTAAAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAGTTGGATACGGTGCTCAAGGTTCTGGTTCCACACTCATCATGCCTTTCCTTGACAATCAGCTCAAGTCTCCAAGTCCTCTTTTGCTACCTAAACAGgtttgttgatattcttcattcgtgcttttggcgtttcgcattgtaaagataaaatgaatcgttctgttgcttatttgttcgtcttctgccaccatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA