Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTCCATGGAGCTGCACTTGGCGAGAAGGAAGTTGAGGCTACCAGAAATAACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaatccaaagcaggcttatgtttggttttattgctttgaagttgccttgatgacttactgtttgacttgcacttctctag

Basic information

species Arabidopsis thaliana
transcript AT3G60750.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60750.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ07676 (Selaginella moellendorffii), 5'ss of exon 5
GTGTCCATGGAGCTGCACTTGGCGAGAAGGAAGTTGAGGCTACCAGAAATAACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaatccaaagcaggcttatgtttggttttattgctttgaagttgccttgatgacttactgtttgacttgcacttctctag
||||||| ||   |||||| |||  |||||||||||| ||||| ||||| |||||||| ||||| |||||||| |||   || || || || ||||| ||||  ||     || |  |   |   | | |   | |||   ||| | ||   ||   |                            
GTGTCCACGGCAGTGCACTAGGCTCGAAGGAAGTTGATGCTACGAGAAAGAACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatgttttgtcacatgatcatcgggctcgaaatgattcacttgtaattctttttcag----------------------------

upper sequence: AT3G60750.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ07729 (Selaginella moellendorffii), 5'ss of exon 5
GTGTCCATGGAGCTGCACTTGGCGAGAAGGAAGTTGAGGCTACCAGAAATAACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaatccaaagcaggcttatgtttggttttattgctttgaagttgccttgatgacttactgtttgacttgcacttctctag
||||||| ||   |||||| |||  |||||||||||| ||||| ||||| |||||||| ||||| |||||||| |||   || || || || ||||| ||||   |     || |  |   |   | | |   |  ||   ||| | ||   ||   |                            
GTGTCCACGGCAGTGCACTAGGCTCGAAGGAAGTTGATGCTACGAGAAAGAACCTTGGCTGGCCTTATGAGCCATTCGTTGTTCCGGAAGAAGTAAAGAGgtatattttgtcacatgatcatcgggctcgaaatggttcacttgtaattctttttcag----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072919|gb|DR368676.1|DR368676
EST:     AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAG                         CCACTGGAGTCGTCATACCCCTGAAGGAGCTACTCTTGAATCTGACTGGAG
genomic: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaat ... acttctctagCCACTGGAGTCGTCATACACCTGAAGGAGCTACTCTTGAATCTGACTGGAG
EST: gi|124848211|gb|EH932648.1|EH932648
EST:     AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAA-G                         CCACTGGAGTCGTCATACACCTGAA
genomic: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaat ... acttctctagCCACTGGAGTCGTCATACACCTGAA
EST: gi|116446637|gb|EG489229.1|EG489229
EST:     GGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAG                         CCACTGGAGTCGTCATACACCTGAAGGAGCTACTCTTGAATCTGACTGGAG
genomic: GGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaat ... acttctctagCCACTGGAGTCGTCATACACCTGAAGGAGCTACTCTTGAATCTGACTGGAG
EST: gi|125002265|gb|EL074534.1|EL074534
EST:     AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAG                         CCACTGGAGTCGTCATACACCTGAAGGAAGCTACTCTTGAATCTGACTGGA
genomic: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaat ... acttctctagCCACTGGAGTCGTCATACACCTGAAGGA-GCTACTCTTGAATCTGACTGGA
EST: gi|125158805|gb|EL187220.1|EL187220
EST:     AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAG                         CCACTGGAGTCGTCATACA
genomic: AACCTTGGATGGCCGTATGAGCCGTTCCAGGTACCTGACGATGTAAAAAGgttagtaaat ... acttctctagCCACTGGAGTCGTCATACA