Sequence
atgc intronic sequence ATGC exonic sequenceGTACTTGGTGGAATGAGAGGGATGACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGgtatggttataattttgatcacatagataattttcaggtcagatcttgaattagaattatataacatatgatattatcttttgtatcag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G60100.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G60100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 6
GTACTTGGTGGAATGAGAGGGATGACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGgtatggttataattttgatcacatagataattttcaggtcagatcttgaattagaattatataacatatgatattatcttttgtatcag-----------
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GTCCTTGGTGGGATGAGAGGGATGACTGGAATGCTTTGGGAAACATCATTGCTTGACCCGGATGAGgtatgcttgtaaactataatgctacgataccataatggcataatatagaagcaaatttggatattttgtctatgtatatcttgaaattggaatgtgcaaa
upper sequence: AT3G60100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G063851_T04 (Zea mays), 5'ss of exon 6
GTACTTGGTGGAATGAGAGGGATGACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGgtatggttataattttgatcacatagataattttcaggtcagatcttgaattagaat-tatataacatatgatattatcttt----tgtatcag------
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GTCCTTGGTGGAATGAGAGGGATGACTGGAATGCTTTGGGAAACATCCCTACTTGATCCAGAGGAGgtaatcttgcaagcatcctcttcatgatgctatgttagcatagtgtactattagctcgtgcccactctatgtcaaaatatgtacactgttccaaatttaa
upper sequence: AT3G60100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G064023_T04 (Zea mays), 5'ss of exon 6
GTACTTGGTGGAATGAGAGGGATGACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGgtatggttataattttgatcacatagataat-tttcaggtcagatcttgaattagaattatataacatatgatattatcttttgtatcag-----------
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GTCCTTGGTGGAATGAGAGGGATGATTGGAATGCTTTGGGAAACATCCCTACTTGACCCAGAGGAGgtaatcttgcatgcatcctcttcatgatgctatgttagcatagtccatagtgtactattagcttgtgccc-attctatcaaaaatatgtacacagttccaa
upper sequence: AT3G60100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0156g00180.t01 (Vitis vinifera), 5'ss of exon 6
GTACTTGGTGGAATGAGAGGGATGACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGgtatggttataattttgatcacatagataattttcaggtcagatctt--gaattagaattatataac-atatgatattatcttttgtatcag----------------------------------------------------------------
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GTACTTGGTGGAATGAGAGGAATGACAGGGTTGCTGTGGGAAACCTCGTTGCTTGACCCAGATGAAgtaaatatcccttttaacccattcttgaaactttgttatggattcttttatattttattttaatgactgtttgatgaatgttgggacatgagggaagatttttatttttttttgggtttccaatttagttctgaaagttgagcttctgtttttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86074093|gb|DR369850.1|DR369850EST: GAGGGATGACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAG GGAATACGGTTTAGAGG
genomic: GAGGGATGACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGgtatggttat ... tttgtatcagGGAATACGGTTTAGAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTACTTGGTGGAATGAGAGGGATGACTGGATTACTCTGGGAAACCTCATTGCTTGATGCAGATGAGgtatggttataattttgatcacatagataattttcaggtcagatcttgaattagaattatataacatatgatattatcttttgtatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG