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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCGGTAAACACAGGTTGTAGTCTTGGAGTGTTAGCTATTGTTACTTGGCAAGTCTTGTTTGTATCTGTTCCCATGGTTTATCTAGCTTTTCGTTTACAGgtcagattctttttcttgaattcctcttaatagattttctgttttcttgaaaaagaaaccaacaatagtttttgattgttttacag

Basic information

species Arabidopsis thaliana
transcript AT3G59140.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G59140.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G30490.1 (Glycine max), 5'ss of exon 7
TTCGGTAAACACAGGTTGTAGTCTTGGAGTGTTAGCTATTGTTACTTGGCAAGTCTTGTTTGTATCTGTTCCCATGGTTTATCTAGCTTTTCGTTTACAGgt------cagattctttttcttgaattcctcttaatag---attttctgttttcttgaaaaagaaaccaacaatagtttttgattgttttacag-------
| |  | ||      |  || |||    || |||||| ||||||||||||||||||||||||| ||  | || ||| ||||| | ||  | ||  | |||||      || |||||| ||  || ||| |  | ||| |   ||||  ||||   ||  ||   ||    | ||||   ||   |      |||        
TACTATGAATTGCTATGCTAATCTAACCGTTTTAGCTGTTGTTACTTGGCAAGTCTTGTTTGTCTCCATACCGATGATTTATTTTGCAATCCGCCTGCAGgtaatgaacaaattcttctt--tggattacattgaatggataatttggtgttgctttctaacttaatttgagaatatcattatttaaccacacattgttatt

upper sequence: AT3G59140.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G37160.1 (Glycine max), 5'ss of exon 5
TTCGGTAAACACAGGTTGTAGTCTTGGAGTGTTAGCTATTGTTACTTGGCAAGTCTTGTTTGTATCTGTTCCCATGGTTTATCTAGCTTTTCGTTTACAGgt------cagattctttttcttgaattcctcttaatag---attttctgttttcttgaaaaagaaaccaacaatagtttttgattgttttacag-------
  |  | ||      |  || |||    || |||||| ||||||||||||||||||||||||| ||  | || ||| ||||| | ||  |  |  | |||||      || |||||| ||  || ||| |  |  || |   ||||  |||||  ||  ||   ||    | |||||  |    |      |||        
CACTATGAATTGCTATGCTAATCTAACCGTTTTAGCTGTTGTTACTTGGCAAGTCTTGTTTGTCTCCATACCAATGATTTATTTTGCAATCAGCCTGCAGgtaatgagcaaattcttctt--tggattacattgcatggataatttggtgtttctttctaacttaatttgagaatagcatcatttaacgacacattgttatt