1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCATATTGTTGGGGAATCACTTGGTTCCTTGAACTTCAAGGAACTCAAAAACCTAGAAGGACGTCTTGAAAAAGGAATCAGCCGTGTCCGCTCCAAAAAGgtaaaatctacgttgctctctctctgtgtctctgtctctctctctatatatagtcccttagtttatatagttcatcacccttttgtgagaattttgcag
species | Arabidopsis thaliana |
transcript | AT3G58780.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTGAAAAAGGAATCAGCCGTGTCCGCTCCAAAAAAG AATGAGCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGGEST: gi|164124033|gb|ES072903.1|ES072903
genomic: CTTGAAAAAGGAATCAGCCGTGTCCGCTCC-AAAAAGgtaaaatcta ... aattttgcagAATGAGCTGTTAGTGGCAGAGATAGAGTATATGCAGAAGAGG
EST: GACGTCTTG-AAAAGGAATCAGCCGTGTCCGCTCCAAAAAG AATGAGCTGTTAGTGGCAGAGATAGAGTATAEST: gi|164235872|gb|ES129735.1|ES129735
genomic: GACGTCTTGAAAAAGGAATCAGCCGTGTCCGCTCCAAAAAGgtaaaatcta ... aattttgcagAATGAGCTGTTAGTGGCAGAGATAGAGTATA
EST: ACCTAGAAGGACGTCTTGAAAAAGGAATCAGCCGTGTCCGCTCCAAAAAG AATGAGCTGTTAGTGGCA
genomic: ACCTAGAAGGACGTCTTGAAAAAGGAATCAGCCGTGTCCGCTCCAAAAAGgtaaaatcta ... aattttgcagAATGAGCTGTTAGTGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCATATTGTTGGGGAATCACTTGGTTCCTTGAACTTCAAGGAACTCAAAAACCTAGAAGGACGTCTTGAAAAAGGAATCAGCCGTGTCCGCTCCAAAAAGgtaaaatctacgttgctctctctctgtgtctctgtctctctctctatatatagtcccttagtttatatagttcatcacccttttgtgagaattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA