Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCACACAGAATAAGGGTGGCGCTTATCTATTTGATATACATTTTTGGATTGGTAAAGATACAAGCCAGgtatttatttttgggcatgatagcatatattacgttctaaatttgaatcgtcattattactaatctgcgattgataattccag

Basic information

species Arabidopsis thaliana
transcript AT3G57410.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G57410.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 5'ss of exon 3
ACCACACAGAATAAGGGTGGCGCTTATCTATTTGATATACATTTTTGGATTGGTAAAGATACAAGCCAGgtatttatttttgggcatgatagcat----atattacgttctaaatttgaatcgtcattattact-aatctgcgattgataattccag-----
||  | |     ||||| || |||||||| | |||||| || ||||||||||| ||||||||||| ||||||||  |  ||     || |   ||    | |||||  | |  | |  |||     ||||   | ||  ||| | |  |  |   |      
ACATCTCCTGGGAAGGGAGGAGCTTATCTGTATGATATCCACTTTTGGATTGGAAAAGATACAAGTCAGgtattactacttccttttgttcttattcagaaattacact-tgtagtaaaataacgtttatgcttgaaattgcaacttctggtcttatcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164010914|gb|EL990497.1|EL990497
EST:     CGCTTATCTATTTGATATACATTTTTTGGATTGGTAAAGATACAAGCCAG                         GATGAAGCTGGAACAGCAGCTGTCAA
genomic: CGCTTATCTATTTGATATACA-TTTTTGGATTGGTAAAGATACAAGCCAGgtatttattt ... ataattccagGATGAAGCTGGAACAGCAGCTGTCAA
EST: gi|116482622|gb|EG525214.1|EG525214
EST:     GCGCTTATCTATTTGATATACA-TTTTGGATTGGTAAAGATACAAGCCAG                         GATGAAGCTGGAACAGCAGCTGTCAAGACAGTTGAACTTGATGCAGCTCTT
genomic: GCGCTTATCTATTTGATATACATTTTTGGATTGGTAAAGATACAAGCCAGgtatttattt ... ataattccagGATGAAGCTGGAACAGCAGCTGTCAAGACAGTTGAACTTGATGCAGCTCTT