Sequence
atgc intronic sequence ATGC exonic sequenceGCACTACTCCTACAAAGATCCAATTATCGAGTTCCTGGCATGTGTGTTTGTCAATTATGACTTTGATGGGGCTCAAAAGAAGATGAAAGAGTGTGAAGAGgtaactcatccacatgtatagatatttttgtttgtgcagaactgtgcaatcaatactctgacattttaacatgatgtag
Basic information
species | Arabidopsis thaliana |
transcript | AT3G57290.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G57290.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G16090.1 (Glycine max), 5'ss of exon 5
GCACTACTCCTACAAAGATCCAATTATCGAGTTCCTGGCATGTGTGTTTGTCAATTATGACTTTGATGGGGCTCAAAAGAAGATGAAAGAGTGTGAAGAGgtaa-ctcatccacatgtatagatatttttgtttgtgcagaactgt-gcaatcaatactctgacattttaac--atgatgtag-------------------------------------------------------------------------
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GCAGCATTCCTATAAGGACCCCATCACTGAGTTTTTGGCTTGTGTTTATGTTAACTATGACTTTGATGGGGCACAAAAGAAGATGAGGGAATGTGAAGAAgtaagcttgctttaatatatgtcaactataggagtgatattacttttgtggtttatccagttctcctttatcttataatatatctgttcatgttagctactagcgtagccccgtaatgggttgtttatattatgcttaccctttttaaaaatgcag
upper sequence: AT3G57290.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G33770.1 (Glycine max), 5'ss of exon 5
GCACTACTCCTACAAAGATCCAATTATCGAGTTCCTGGCATGTGTGTTTGTCAATTATGACTTTGATGGGGCTCAAAAGAAGATGAAAGAGTGTGAAGAGgtaa-ctcatccacatgtatagatatttttgtttgtgcagaactgtg------caatcaatactctgacattttaacatg-atgtag--------------------------------------------------------------
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GCAGCATTCATATACGGACCCTATCACTGAGTTTTTGGCTTGTGTTTATGTCAACTATGATTTTGATGGGGCACAAAAGAAGATGAGGGAATGTGAAGAAgtaagcttgctttaatatatgtcaactgtaggagtgatgtaactttggtggtttattcagttctcctttatcttataatacgtgtccatgttagctactagcactgtaatgggttgtttatattatgcttacctttttaaaatatgcag
upper sequence: AT3G57290.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv00s0252g00070.t01 (Vitis vinifera), 5'ss of exon 5
GCACTACTCCTACAAAGATCCAATTATCGAGTTCCTGGCATGTGTGTTTGTCAATTATGACTTTGATGGGGCTCAAAAGAAGATGAAAGAGTGTGAAGAGgtaactcatccacatgta-tagatatttttgtttgtgcagaactgtgcaatcaa-tactctgacattttaacatgatgtag-------------------
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GCAGTATGCCTTCAAAGATCCTATCACAGAATTTTTAGCATGTGTCTATGTCAATTATGACTTCGATGGAGCACAAAAGAAGATGAGAGAATGTGAAGAAgtaagtttcctgtacttaatagcggtttaacttcctgatagttccttcagtaaaattttctcactatgtttcccattgaggttcactccaattgagctatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125047930|gb|EL120199.1|EL120199EST: AAGAGTGTGAAGAG GTCATTGTGAATGATCCATTCCTTGGCAAGCGAGTTGAGGATGGAAACTTT
genomic: AAGAGTGTGAAGAGgtaactcatc ... catgatgtagGTCATTGTGAATGATCCATTCCTTGGCAAGCGAGTTGAGGATGGAAACTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACTACTCCTACAAAGATCCAATTATCGAGTTCCTGGCATGTGTGTTTGTCAATTATGACTTTGATGGGGCTCAAAAGAAGATGAAAGAGTGTGAAGAGgtaactcatccacatgtatagatatttttgtttgtgcagaactgtgcaatcaatactctgacattttaacatgatgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA