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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTGgtaaatgtttcttttctggtttggtcagatgctctttggatacattttctgattgaacttttctcttatatttccttcttggtttgttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G55770.6
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55770.6 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G42100.1 (Glycine max), 5'ss of exon 3
CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTGgtaaatgtttcttttctggtttggtcagatgctctttggat---acattttctgattgaacttttctcttata---tttccttcttggtttgttttcag----------------
|| | ||    ||||||||| |||||||||||||||||||  | |    | ||  ||  | | |   | || |||     || |||   | ||    | |  | | |    ||| || ||     |||   ||                 
CTTCTAAGCAAGCTGACAAAACAACTCCTGAGCTGgtaaaaatcttgaatttgtctttttgaaacattgttgggaatgagcaatttagaaatgggtctatgacatttggagttttctgctgacactgtcggcatcttttgattattctag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164129476|gb|ES026513.1|ES026513
EST:     CTCCTGAGCTG                         ACAAGGACGCCTAGCCGAGTTGCTGGCAGGTTCTCTGGTACACAAGAGAAA
genomic: CTCCTGAGCTGgtaaatgttt ... ttgttttcagACAAGGACGCCTAGCCGAGTTGCTGGCAGGTTCTCTGGTACACAAGAGAAA
EST: gi|47829977|gb|CK119661.1|CK119661
EST:     CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTG                         ACAAGGACGCCTAGCCGAGTTGCTGGCAGGTTCTCTGGTACACAANGAGAA
genomic: CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTGgtaaatgttt ... ttgttttcagACAAGGACGCCTAGCCGAGTTGCTGGCAGGTTCTCTGGTACACAA-GAGAA
EST: gi|125100058|gb|EL155652.1|EL155652
EST:     CAACTCCTGAGCTG                         ACAAGGACGCCTAGCCGAGTTGCTGGCAGGTTCTCTGGTACACAAGAGAAA
genomic: CAACTCCTGAGCTGgtaaatgttt ... ttgttttcagACAAGGACGCCTAGCCGAGTTGCTGGCAGGTTCTCTGGTACACAAGAGAAA
EST: gi|124757831|gb|EH847961.1|EH847961
EST:     CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTG                         ACAAGGACGCCTAGCCG
genomic: CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTGgtaaatgttt ... ttgttttcagACAAGGACGCCTAGCCG
EST: gi|125078742|gb|EL141010.1|EL141010
EST:     CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTG                         ACAAGGACGCCTAGCCGAGTTGCTGGCAGG
genomic: CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTGgtaaatgttt ... ttgttttcagACAAGGACGCCTAGCCGAGTTGCTGGCAGG
EST: gi|301502045|gb|HO207585.1|HO207585
EST:     CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTG                         ACAAGGACGCCTAGCCGACTTGCTGGCAGGTTCTCTGGTACACAAGAGAAA
genomic: CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTGgtaaatgttt ... ttgttttcagACAAGGACGCCTAGCCGAGTTGCTGGCAGGTTCTCTGGTACACAAGAGAAA
EST: gi|124824735|gb|EH909601.1|EH909601
EST:     CAAATCAACTCCTGAGCTG                         ACAAGGACGCCTAGCCGAGTTGCTGGCAGGTTCTCTGGTACACAAGAGAAA
genomic: CAAATCAACTCCTGAGCTGgtaaatgttt ... ttgttttcagACAAGGACGCCTAGCCGAGTTGCTGGCAGGTTCTCTGGTACACAAGAGAAA
EST: gi|124979033|gb|EL052135.1|EL052135
EST:     CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTG                         ACAAGGACGCCTAGCCGAGTTG
genomic: CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTGgtaaatgttt ... ttgttttcagACAAGGACGCCTAGCCGAGTTG
EST: gi|125009929|gb|EL082198.1|EL082198
EST:     CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTG                         ACAAGGACGCCTAGCCGAGTTG
genomic: CTGCAAAATCGGCTGACAAATCAACTCCTGAGCTGgtaaatgttt ... ttgttttcagACAAGGACGCCTAGCCGAGTTG