1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGGCGTCTTCAGGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAATTTGATGACTTAGgtcagtatcatccgcttgttcctttttattagtctatagtttagtagtttgctttctatggttgaagtctgagacaaaagttgttctgctgcaacag
species | Arabidopsis thaliana |
transcript | AT3G55530.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAATTTGATGACTTAG ATTATGAAACTTTAAGAGCACTTGATTCTGATAATGTTTCCACAEST: gi|86074728|gb|DR370485.1|DR370485
genomic: ACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAATTTGATGACTTAGgtcagtatca ... gctgcaacagATTATGAAACTTTAAGAGCACTTGATTCTGATAATGTTTCCACA
EST: GAATTTGATGACTTAG ATTATGAAACTTTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTAEST: gi|86078329|gb|DR374086.1|DR374086
genomic: GAATTTGATGACTTAGgtcagtatca ... gctgcaacagATTATGAAACTTTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTA
EST: CGGGAATTTGATGACTTAG ATTATGAAACTTTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTA
genomic: CGGGAATTTGATGACTTAGgtcagtatca ... gctgcaacagATTATGAAACTTTAAGAGCACTTGATTCTGATAATGTTTCCACAACTTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTTGCATGTGCCTCCTTCCATTGCTCTTGCTACGAGAGGGCGTCTTCAGGGACTTAGGCTCCAGCTGGCTCTTCTTGATCGGGAATTTGATGACTTAGgtcagtatcatccgcttgttcctttttattagtctatagtttagtagtttgctttctatggttgaagtctgagacaaaagttgttctgctgcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG