Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGATCAGTTTAAACAAGAATTTTGCAAGTTATATGGCATGACGATGGAACCCTTATTGAACATCTACTTACAGGCAGGCTTGTCTGCGCTGAAAACTCCgtaacgatcaaactctatcaaaattgatgtttttgattgtctattttctgcatctgataaaggggcagaaagtaagttttcgaaatgacaccctaatgtgattcttactggtgggttgcgtttgtaccttgatatgactcag

Basic information

species Arabidopsis thaliana
transcript AT3G55070.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G55070.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G177026_T02 (Zea mays), 5'ss of exon 5
TTGATCAGTTTAAACAAGAATTTTGCAAGTTATATGGCATGACGATGGAACCCTTATTGAACATCTACTTACAGGCAGGCTTGTCTGCGCTGAAAACTCCgtaacgatcaaactctatcaaaattgatgtttttgattgtctattttctgcatctgataaaggggcagaaagtaa-gttttcgaaatgacaccctaatgtgattcttactggtgggttgcgtttgtaccttgatatgactcag
||||    || || ||||| |||||||||||||||||||||||  | || ||  |  ||||||| ||  | || |||||| || | || || || || ||||| |  ||  | | | |   | ||  | || |  || |||| |||  |||   | | | |  |   |  ||||   |||| |  |||  | |||    ||    | ||   |   ||                         
TTGACATTTTCAAGCAAGATTTTTGCAAGTTATATGGCATGACACTAGAGCCGCTGCTGAACATATATCTGCAAGCAGGCCTGACAGCTCTCAAGACCCCgtatcc-tcgca-tgtgtttcacttacttttgtctatggtct-tttattgc---taaaatacagtttgctagtattatttttgttatggtatcctgtattgtccttgaccatttatttaaag---------------------