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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGTCTACTACATATGAAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTACCCgtaagctttaatctaatcccaatatctaccttgacttaaaaaaaggaacctacaatcattctcaattcctgaattttccatttgatctttatgtag

Basic information

species Arabidopsis thaliana
transcript AT3G54880.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164079234|gb|ES181514.1|ES181514
EST:     CCTTTCTCTGAGTCGATTCCTTTACCC                         GAGATGGTGGACTTTCTTGTCGATATTTGGTACGATGAAGGCCTTTACGAT
genomic: CCTTTCTCTGAGTCGATTCCTTTACCCgtaagcttta ... ctttatgtagGAGATGGTGGACTTTCTTGTCGATATTTGGTACGATGAAGGCCTTTACGAT
EST: gi|125148463|gb|EL182120.1|EL182120
EST:     AAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTACCC                         GAGATGGTGGACTTTCTTGT
genomic: AAGATCTTCTCTCAACTCATGAACCTTTCTCTGAGTCGATTCCTTTACCCgtaagcttta ... ctttatgtagGAGATGGTGGACTTTCTTGT