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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAATTCTCAGCAAAATGGGTGAAGgttagtcatctcttgcgaaaatgtttatataatcattatgattagattattctgtttttcaaagtgtaggagaaatatgtttatttggtcgccagttatcttaatcaattggattgtattttggcag

Basic information

species Arabidopsis thaliana
transcript AT3G53570.4
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124936988|gb|EL013816.1|EL013816
EST:     AAATGGGTGAAG                         GTACATTTGGACAAGTATTGGAATGCTTTGATAATAAAAACAAAGAAGTCG
genomic: AAATGGGTGAAGgttagtcatc ... attttggcagGTACATTTGGACAAGTATTGGAATGCTTTGATAATAAAAACAAAGAAGTCG
EST: gi|86073146|gb|DR368903.1|DR368903
EST:     ATCAAATTCTCAGCAAAATGGGTGAAG                         GTACATTTGGACAAGTATTGGAATGCTTTGATAATAAAAACAAAGAAGTCG
genomic: ATCAAATTCTCAGCAAAATGGGTGAAGgttagtcatc ... attttggcagGTACATTTGGACAAGTATTGGAATGCTTTGATAATAAAAACAAAGAAGTCG