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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGTTGCACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGGCAATTTGTATGTGTATGAGAAGgcaagctcagatatcagaatttgttttcttgcatatgacttttaagttgcctgattttgtctaatccctgatcctgattaatttaacttaatag

Basic information

species Arabidopsis thaliana
transcript AT3G53390.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G05890.1 (Glycine max), 5'ss of exon 6
---TCGTTGCACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGGCAATTTGTATGTGTATGAGAAGgcaag-ctcagatatcaga--atttgttttcttgcat--atgactttta-agttgcctgattttgtctaatccctgatcctgattaatttaacttaatag
   |||||| ||| ||||| |||||||||||||||||||||  || ||||| || |||||||| ||||| ||||||||||| ||||| |||||||| ||||   ||||    || || ||  |||  |  || |||  ||  ||  | |||   | | | ||   |  |    | |  || |         
CAGTCGTTGTACTTGTATTGCTTGGGTGCCTGGAGGTGATGCTGCCTTTGTTGTAGCTCATGCTGATGGGAATTTGTATgtatatgaaaaggcaagactcaataatcaagagatgtgcttatttggttcaattactactatggtgacttgagcatatattatatttcctttccact--ttcag--------

upper sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G20240.1 (Glycine max), 5'ss of exon 6
TCGTTGCACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGGCAATTTGTATGTGTATGAGAAGgcaag-ctcagatatcagaatttgttttcttgcatatgacttttaagttgcctgattttgtctaatccctgat--cctgattaatttaacttaatag
|| ||| ||| ||||| ||||||| |||||||||||||| || ||||| || | |||||| ||||| ||||||||||| ||||| |||||||| ||||   ||||  |  |||  |  |     | | ||   | |    ||||||   |  ||     ||  |||    | ||| |        
TCATTGTACTTGTATTGCTTGGGTTCCTGGAGGTGATGGTGCCTTTGTTGTAGGTCATGCTGATGGGAATTTGTATgtatatgaaaaggcaaggctcaataatcaagagatgtgctaatttggttcaattactactatggtgatttgagcatatattacatttcctttccactttcag-------

upper sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 5
TCGTTGCACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGGCAATTTGTATGTGTATGAGAAGgcaag-ctcagatatcagaatttg---ttttcttgcatatgacttttaagttgcctgattttgtctaatcc--ctgatcctgattaatttaacttaatag---
|||||| ||| ||||| | ||||||||||||||||||||  | ||||| ||| ||||  | ||||| ||||||||||| || || |||||||| ||||   |||| ||       ||   ||     | | || | | |  | |  || ||   | |      |||  | |    ||       ||     
TCGTTGTACTTGTATTGCATGGGTGCCTGGAGGTGATGGTTCTTTTGTTGTTTCTCACACTGATGGGAATTTGTATGTATACGAAAAGgcaagtctcaatcatcaaaagagaaacttactttatggttcatttatgaatatctttcttatgatgagttaagtagatatttacctcttctttcctatttcag

upper sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv08s0040g01960.t01 (Vitis vinifera), 5'ss of exon 5
TCGTTGCACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGGCAATTTGTATGTGTATGAGAAGgcaagc-tcagata---tcagaatttgttttcttgca----tatgacttttaagttgcctgattttgtctaatccctgatcc---tgattaatttaacttaatag
 ||||| ||||| ||| | ||||| ||||  |||||||| || || || ||||||||||| ||||| |||||||| |||||||||||||||||| ||| |||   |   ||| |  ||  || ||    | | || ||    || | | ||| | |  | |  |||       | || |||||    ||    
CCGTTGTACTAGCATTGCATGGGTCCCTGATGGTGATGGTGCTTTCGTTGTTGCTCATGCTGATGGAAATTTGTACGTGTATGAGAAGgcaagcctcaaatacagtagaaatattgttcatttcagctgtttaacattcttattccattattctataaactgactggagtgtgtaatcaattttttctag---