1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTAAATTGGAAAAGGGGGCAGTGCTTAAGGCTATGTGTTCGGGTTTTCAAGAGTCAACGGAACCAGCTATCTGTCTTACTGAAGgtactattatccacgacatttgcaactctattttttttaacagaaaccacagttctcttgataggccaatatatattttcaaaacttgcattagagctatccttaattctttatctattgttttatatcatgggagagaaggatagttttcagacatgcttctgatttttgcag
species | Arabidopsis thaliana |
transcript | AT3G52850.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TGTTCGGGTTTTCAAGAGTCAACGGAACCAGCTATCTGTCTTAACTGAAG ATTTGGAAACTAATGAATGTTTGGAAEST: gi|86037689|gb|DR333444.1|DR333444
genomic: TGTTCGGGTTTTCAAGAGTCAACGGAACCAGCTATCTGTCTTA-CTGAAGgtactattat ... atttttgcagATTTGGAAACTAATGAATGTTTGGAA
EST: GTGTTCGGGTTTTCAAGAGTCAACGGAACCAGCTATCTGTCTTACTGAAG ATTTGGAAACTAATEST: gi|86037688|gb|DR333443.1|DR333443
genomic: GTGTTCGGGTTTTCAAGAGTCAACGGAACCAGCTATCTGTCTTACTGAAGgtactattat ... atttttgcagATTTGGAAACTAAT
EST: GTGTTCGGGTTTTCAAGAGTCAACGGAACCAGCTATCTGTCTTACTGAAG ATTTGGAAACTAATGAATGTTTGGAAAACAACGGTGGATGCTGGCAAGACAEST: gi|164219826|gb|ES175784.1|ES175784
genomic: GTGTTCGGGTTTTCAAGAGTCAACGGAACCAGCTATCTGTCTTACTGAAGgtactattat ... atttttgcagATTTGGAAACTAATGAATGTTTGGAAAACAACGGTGGATGCTGGCAAGACA
EST: GTGTTCGGGTTTTCAAGAGTCAACGGAACCAGCTATCTGTCTTACTGAAG ATTTGGAAACTAATGAATGTTTGGAAAAC
genomic: GTGTTCGGGTTTTCAAGAGTCAACGGAACCAGCTATCTGTCTTACTGAAGgtactattat ... atttttgcagATTTGGAAACTAATGAATGTTTGGAAAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAATTGGAAAAGGGGGCAGTGCTTAAGGCTATGTGTTCGGGTTTTCAAGAGTCAACGGAACCAGCTATCTGTCTTACTGAAGgtactattatccacgacatttgcaactctattttttttaacagaaaccacagttctcttgataggccaatatatattttcaaaacttgcattagagctatccttaattctttatctattgttttatatcatgggagagaaggatagttttcagacatgcttctgatttttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG