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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACTGAGGAGAGTGCGAGAAGACTCCTAACTAATGTAGCATGTTTACTGAAACCAGGGGGTTATTTTTTCGGTATCACTCCTGACTCGTCTACGATTTGgtaatgatgttttctgtatcaatgcatcaacttcagcatttgattgcctatatattttgatcagttggactgcgctccttaacattctggtcaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G52210.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G52210.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G41590.1 (Glycine max), 5'ss of exon 5
AAACTGAGGAGAGTGCGAGAAGACTCCTAACTAATGTAGCATGTTTACTGAAACCAGGGGGTTATTTTTTCGGTATCACTCCTGACTCGTCTACGATTTGgtaatgatgttttctgta-tcaatgcatcaacttcagcatttgattgcc-tatatattttgatcagttggactgcgctccttaacattctggtcaaacag-
| ||||| ||||  ||  | | ||| ||   ||||||  ||| | | |||||||| |||||||||||| | ||||| ||||||||||| ||||| || |||||     ||| || |    | ||   ||          | |   ||   |||    ||| ||  |||  | ||   |    || ||||   | |   |  
AGACTGAAGAGAAAGCACGGAAACTGCTGCATAATGTGTCATCTCTGCTGAAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGgtatgagagttctcagaggcctattattcttgcatgctgtctctctgttgtattctgttttatttgttctattg-attgaagaaaattcatttgatttata

upper sequence: AT3G52210.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G13240.1 (Glycine max), 5'ss of exon 5
AAACTGAGGAGAGTGCGAGAAGACTCCTAACTAATGTAGCATGTTTACTGAAACCAGGGGGTTATTTTTTCGGTATCACTCCTGACTCGTCTACGATTTGgtaatgatgttttctgtatcaatgcatcaacttcagcatttgattgcctatatatt-ttgatcagttggactgc-gctccttaacattctggtcaaacag
| ||||| ||||  ||  | | ||| ||   ||||||  | | | | |||||||| |||||||||||| | ||||| ||||||||||| ||||| || |||||     ||| || |   |     ||        ||| |   |  |   | |||| ||  | | |||  ||   | |     | | |    |  |    
AGACTGAAGAGAAAGCACGGAAACTGCTGCATAATGTGTCTTCTCTGCTGAAACCTGGGGGTTATTTTCTTGGTATTACTCCTGACTCATCTACCATATGgtatgagagttctcagaggcctattattcttgcatgcagtctctctctgttgtattcttttttatttgctctattgatggaagaaaattcatttgattta

upper sequence: AT3G52210.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv13s0074g00190.t01 (Vitis vinifera), 5'ss of exon 5
AAACTGAGGAGAGTGCGAGAAGACTCCTAACTAATGTAGCATGTTTACTGAAACCAGGGGGTTATTTTTTCGGTATCACTCCTGACTCGTCTACGATTTGgtaatgatgttttctgtatcaatgcatcaacttcagcatttgattgcctatatattttgatcagttggactgcgctcctta----acattctggtcaaacag----
|||  || || |  |  |||||||| |||  ||| || |||| ||| ||||||||||||||||| ||||| || || || |||||||| ||||| || ||||| |     | |   |||||| |     ||   |   |||  || ||| |  |  |        |||| | |    ||||     ||| |||     |  |    
AAAACGAAGATAAAGGAAGAAGACTTCTACATAACGTGGCATCTTTGCTGAAACCAGGGGGTTACTTTTTTGGCATTACACCTGACTCATCTACCATATGgta-tagccctatgactatcaaag-----accctattgttttttttcctttggacctgttgtttctggagttcataacttatattgcatcctgcatgcagggtttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86072179|gb|DR367936.1|DR367936
EST:     AAACCAGGGGGTTATTTTTTCGGTATCACTCCTGACTCGTCTACAATTTG                         GGCAAAGTACCAGAAAAATGTTGAAGCATACCACAACAGAAGCGGTGCAAA
genomic: AAACCAGGGGGTTATTTTTTCGGTATCACTCCTGACTCGTCTACGATTTGgtaatgatgt ... ggtcaaacagGGCAAAGTACCAGAAAAATGTTGAAGCATACCACAACAGAAGCGGTGCAAA