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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACACGAGATCGATAAAGTCACAGCAGGACAACGGTTGGACCTGAATCTTGAAAAAGGgtcagagaaacagctaccttatttctctgttcttaggttatgtctttcgaaattgtctgtgatatgtttcaatgatgtcgcag

Basic information

species Arabidopsis thaliana
transcript AT3G51090.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51090.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G116427_T01 (Zea mays), 5'ss of exon 5
ACACGAGATCGATAAAGTCACAGCAGGACAACGGTTGGACCTGAATCTTGAAAAAGGgtcagagaaacag---ctacct---tatttctctgttcttaggttatgtctttcgaaattgtctg--tgatatgttt-caatgatgtcgcag---------
  | |||||||| || ||||| |||||||| || ||||| ||||||||||||| ||||| |||  |   |   |||  |   |||  |||| | |   |   || |||||    ||| ||||  |   |  ||| || ||||   | |          
GTATGAGATCGACAAGGTCACCGCAGGACAGCGATTGGATCTGAATCTTGAAAGAGGgtaagatcatttgtctctatttagatatgcctctctacactgtccatttcttttcccattatctggctaccagctttgcactgat-cagtaaaacataaga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116476184|gb|EG518776.1|EG518776
EST:     ATCGATAAAGTCACAGCAGGACAACGGTTGGACCTGAATCTTGAAAAAGG                         GAGGATAAGAGATGAGTTACAAAATCAAAACGGAGAAACCTCTAACCTTAC
genomic: ATCGATAAAGTCACAGCAGGACAACGGTTGGACCTGAATCTTGAAAAAGGgtcagagaaa ... gatgtcgcagGAGGATAAGAGATGAGTTACAAAATCAAAACGGAGAAACCTCTAACCTTAC