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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACTATTTATTTCTCTCAAGgtttgttttctgaattctaagtttatatatgctactgtatggccaagcgcagaacagcgggggacatcttgtgattcctcgttgtgcttcttatcgttcatgctctttacctacatgtgtttcctactaagtgtctgttttcgctttgatttctgctcaagtattaactatgcgtttcttttcttcag

Basic information

species Arabidopsis thaliana
transcript AT3G50500.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50500.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os12g39630.1 (Oryza sativa), 5'ss of exon 5
--------------GGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACTATTTATTTCTCTCAAGgtttgttttctgaattctaagtttatatatgctactgtatggccaagcgcagaacagcgggggacatcttgtgattcctcgttgtgcttcttatcgttcatgctctttacctacatgtgtttcctactaagtgtctgttttcgctttgatttctgctcaagtattaactatgcgtttcttttcttcag
               ||  | |||||||| || ||  || ||||||||||| | || ||||| ||||| |||||||| |||||||| || |||||||||   || | | || |  | | ||| ||    | | ||||   ||    |||| |             || ||   ||  | |   |||||| |    |||    ||| |  ||                                                                                           
CAAGTATGCCATCGTGACTTAAAGCTGGAGAACACTCTGCTAGATGGAAGTACTGCTCCTCGCTTGAAGATATGTGACTTTGGTTACTCGAAGgtacta---atgtttttctatttatttttgctatgcttttagttgggat----tacttt-------------gatcatttggcaatactatgtgatactgatttgatgatctgaaggtag-----------------------------------------------------------------------------------------

upper sequence: AT3G50500.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os03g55600.1 (Oryza sativa), 5'ss of exon 5
--------------GGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACT-ATTTATTTCTCTCAAGgtttgttttctgaattctaagtttatatatgctactgtatggccaagcgcagaacagcgggggacatcttgtgattcctcgttgtgcttcttatcgttcatgctctttacctacatgtgtttcctactaagtgtctgttttcgctttgatttctgctcaagtattaactatgcgtttcttttcttcag
               ||| ||||| |||| |||||| || | |||||||| || || || || |||||||||||||| ||||| ||||| |||||||| |  || |  |   |   |   ||  | ||| |||   ||   |     |     |   |||   | | | |      |    | |    |    |                                                                                                             
CAAGTATGCCACCGTGATTTGAAGTTGGAGAATACACTGCTGGATGGAAGCCCTGCTCCACGCTTGAAAATATGTGACTTTGGCTATTCTAAGgtacttagctaatgtttctataatacatta-cggaagtctgttttcggaacaattcactaagcaccataggtaaatccataatgctgttttcagaacaatt-------------------------------------------------------------------------------------------------------------

upper sequence: AT3G50500.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G06250.1 (Glycine max), 5'ss of exon 5
--------------GGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACTATTTATTTCTCTCAAGgtttgttttctgaattctaagtttatatatgctactgtatggccaagcgcagaacagcgggggacatcttgtgattcctcgttgtgcttcttatcgttcatgctctttacctacatgtgtttcctactaagtgtctgttttcgctttgatttctgctcaagtattaactatgcgtttcttttcttcag
              ||| |||||| ||||||| || ||||| |||||||| ||||||| || |||||| |||||||||||||| || |||||||||     | |||||       ||  |  | ||  ||| | | ||||||||  ||||| |||   |||| | |         |   | ||| | | |  |  || ||                                                                                                      
GAAGTGTGTCACCGGGACCTGAAGTTGGAAAACACTTTGTTGGATGGAAGCCCGGCACTTCATTTGAAGATATGTGATTTTGGATACTCCAAGgtaag---tgtttcttc-----ttcatagtgtgggttccatgcttatatattttactggatgtgtaagctctgtttcagtaagtttacctt-taaatgatatttttgtc----------------------------------------------------------------------------------------------------

upper sequence: AT3G50500.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA01G39020.2 (Glycine max), 5'ss of exon 5
--------------GGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACTATTTATTTCTCTCAAGgtttgttttctgaattctaagtttatatatgctactgtatggc-caagcgcagaacagcgggggacatcttgtgattcctcgttgtgcttcttatcgttcatgctctttacctacatgtgtttcctactaagtgtctgttttcgctttgatttctgctcaagtattaactatgcgtttcttttcttcag
              ||| |||||| ||||||| || ||||| |||||||| ||||| | || |||||| |||||||||||||| || |||||||||     | ||||| |||    |  |  | ||  |||   | ||||||||  |||||    |   |  | | |         |   | ||| | | |  |  || ||                                                                                                      
GAAGTGTGTCACCGGGACCTGAAGTTGGAAAACACGTTGTTGGATGGAAGCCCGGCGCTTCATTTGAAGATATGTGATTTTGGATACTCCAAGgtaag---tgtttct-tca----tcatagtgtgggttccttgcttatatattttactgggaagtgtagactctggttcagtaagtttacctt-taaataatacttttgt-----------------------------------------------------------------------------------------------------

upper sequence: AT3G50500.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G09460.1 (Glycine max), 5'ss of exon 5
--------------GGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACTATTTATTTCTCTCA---AGgtttgttttctgaattctaagtttatatatgctactgtatggccaagcgcagaacagcgggggacatcttgtgattcctcgttgtgcttcttatcgttcatgctctttacctacatgtgtttcctactaagtgtctgttttcgctttgatttctgctcaagtattaactatgcgtttcttttcttcag
              |||  ||||||||||||| || ||| | ||||||||  ||||||||||||| || ||||| |||||||| || |||||||||   |||  ||  ||||       ||  ||| ||||||  | |  || || |  ||| |           |  ||  |       || ||   | | |                                                                                                                
CAAGTATGTCATCGGGACTTGAAGCTGGAAAACACTTTGCTGGATGGAAGCTCGGCACCTCGTTTAAAGATATGCGATTTTGGGTACTCCAAGgtaaggttttctttcctcacttgatcttcatttatgaatttcatgcatacatgttttaccggcacttgttaggttgagtaatatttaac-tccaattactt---------------------------------------------------------------------------------------------------------------

upper sequence: AT3G50500.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G20610.4 (Glycine max), 5'ss of exon 5
--------------GGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACTATTT-ATTTCTCTCAAGgtttgttttctgaattctaagtttatatatgctactgtatggccaagcgcagaacagcgggggacatcttgtgattcctcgttgtgcttcttatcgttcatgctctttacctacatgtgtttcctactaagtgtctgttttcgctttgatttctgctcaagtattaactatgcgtttcttttcttcag
              |||  ||||||| ||||| || ||| | |||||||| |||||||||||||| || ||||| |||||||| || |||||||||   ||| |||| |||||    ||| | |     || | |||||    ||||| |  |||       |   ||   |    ||   |   || || | |   |                                                                                                         
CAAGTATGTCATCGGGACTTGAAGCTTGAAAACACTTTGCTGGATGGAAGCCCGGCACCTCGTTTAAAGATATGCGATTTTGGGTACTCCAAGgtaaggttttatttttctca---cttgatcttcatgttgtgagttt---catgcttccatattattttactgggacttgtttagg---ttgagtaatacttaactccaa-----------------------------------------------------------------------------------------------------

upper sequence: AT3G50500.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0197g00080.t01 (Vitis vinifera), 5'ss of exon 5
--------------GGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACTATTTATTTCT---CTCAAGgtttgttttctgaattctaagtttatatatgctactgtatggccaagcgcagaacagcgggggacatcttgtgattcctcgttgtgcttcttatcgttcatgctctttacctacatgtgtttcctactaagtgtctgttttcgctttgatttctgctcaagtattaactatgcgtttcttttcttcag
              |||  ||||| |||||||||| ||||| |||||||| || || || |||||||| |||||||||||||| || ||||||||||||  | | |      ||  | ||   ||  ||   | |  ||   ||| | ||      ||| ||  |  || |    |  | | || || | ||  |                                                                                                              
CAAATATGTCACCGGGACTTGAAGTTGGAAAATACTTTGTTGGATGGAAGCCCAGCTCCACGTTTGAAGATATGTGATTTTGGGTACTCCAAGgtactaactgtcttcatattcctgcttcagttggtgtcatttctgtgcttatctcctggaac-tgggcattccaaggatga-gatgaaaattttcttatatc--------------------------------------------------------------------------------------------------------------

upper sequence: AT3G50500.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S240_91V6.1 (Physcomitrella patens), 5'ss of exon 5
--------------GGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTACTATTTATTTCTCTCAAGgtttgttttctgaattctaagtttatatatgctactgtatggccaagcgcagaacagcgggggacatcttgtgattcctcgttgtgcttcttatcgttcatgctctttacctacatgtgtttcctactaagtgtctgttttcgctttgatttctgctcaagtattaactatgcgtttcttttcttcag
               ||| ||||  ||||||| || ||||| ||||||||||| || ||| |  ||||||| ||||||||||| ||||| |||||   ||||| |  | ||  |  | ||||  |    |  |||    |     | |     |||  | |   |  |  || | ||  ||      ||   ||  ||  | | |||    | |   | |||   |  || |||||  |     || ||||||        |||| | |                                 
CAAATTTGCCATCGTGATTTGAAATTGGAAAACACTTTGTTGGATGGAAGTCCTGCGCCTAGGCTGAAAATCTGTGATTTTGGGTATTCAAAGgtgagatttactcgtttcttg--tcgtttcattgcgttgaagcagct-----cgaggaagtggataggtttaccattgctgaggctataacac-atgtttcactggtccttttaaatcttacagtttttttattaat-tgttttttgacgggtttctgtt--------gattgcag---------------------------------

upper sequence: AT3G50500.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S116_98V6.1 (Physcomitrella patens), 5'ss of exon 5
--------------GGATCTGAAGCTGGAAAATACATTGTTAGATGGAAGTCCGGCACCTCGTTTGAAAATATGTGATTTTGGTTATTCCAAGGTA--CTATTTATTTCTCTCAAGgtttgttttctgaattctaagtttatatatgctactgta-tggccaagcg-cagaacagcgggggacatcttgtgattcctcgttgtgcttcttatcgttcatgctctttacctacatgtgtttcctactaagtgtctgttttcgctttgatttctgctcaagtattaactatgcgtttcttttcttcag
               ||| ||||  |||| || |||||| | ||||||||||| |||||| |  ||||||| ||||||||||| ||||| ||||||  ||  |  | | | |    ||||||||| ||| |  |  | | | |||    | || | | | |||    || ||| |  | |  ||  |      |  |    |   ||  |||| || ||| | ||    |   ||                                                                       
CAAATTTGTCACCGTGATTTGAAATTGGAGAACACATTGCTGGATGGAAGTCCTGCACCTAGACTGAAAATCTGTGATTTTGGATATTCAAAGgtaagcttctcgtctgtttgtttgtttgttttttgattgttccgctgagatagctcaatgaagtagtcaactttcacaactgatgagagcacatcacaggttgta--cgaattttctatctttgatggttttctgtttattgcag--------------------------------------------------------------------