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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATCAACTAACATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTGTAGACCGTGATTTAAAGgtatagcttagagagaatctttatgctttagtgattcgtcttttcgcaatggacctgctttcttgacgagggttatcaaatgttgaatggctttag

Basic information

species Arabidopsis thaliana
transcript AT3G50100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G50100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G18400.1 (Glycine max), 5'ss of exon 5
GGAATCAACTAACATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTGTAGACCGTGATTTAAAGgtatagcttagagagaatctttatgctttagtg-------attcgtcttttcgcaatggacctgctttcttgacgagggttatcaaa-tgttg-----aatggctttag---------------------------
| | || ||| | ||||| |||||||| || || |||||||| ||||||||||||||||| |   |||||| |||  |||| ||||||| | ||||| |||||    |||   | | ||||| |  |  |          |  |  ||      ||   |   | || |      |  ||  | ||| || ||      | | | ||                             
GAAGTCTACTGAAATGGTTGCTGTTGACTGCGAAATGGTTCTCTGTGAAGATGGGACTGAAGCAGTAGTTAAAGTCTGTGTGGTAGACCATAATTTAGAGgta--atttatgcatactctttcttttgcataacccccccacccccctcccaaaaaaaaaagaggttgcacataaattgtgtttaaactgctgtcctttacgacattgtagatagataattttcggaacttttcag

upper sequence: AT3G50100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv07s0129g01120.t01 (Vitis vinifera), 5'ss of exon 5
GGAATCAACTAACATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTGTAGACCGTGATTTAAAGgtatagcttagag-----agaatctttatgctttagtgattcgtcttttcgcaatgga---cctgctttcttgacgagg-gttatcaaatgttgaatggctttag----------
   ||||| |   ||| | ||||||||||||||||||||||| ||||||||||| ||||| |||||||| || ||  ||||||| || ||  ||||| |||||    |   |      | |   | |||||| ||        | || || || |  |   ||  | ||||  | |||  | | |  ||| |    | |   ||           
AAGATCAAATGCAATGCTTGCTGTTGATTGTGAGATGGTTCTCTGTGAAGATGGAACTGAAGGTTTAGTGAGGGTATGTGTTGTGGATCGCAATTTACAGgtactaatggaactttttaaaccttatatgctatataagcatcttttctcccattacattaccaaccttctctaagagaaggtcttgaatatcactttggaatattgtctttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164171209|gb|ES042525.1|ES042525
EST:     ATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTGTAGACCGTGATTTAAAG                         GTGATTCTTGACGAGTTTGTGAAACCGAACAAACCTGTTG
genomic: ATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTGTAGACCGTGATTTAAAGgtatagctta ... atggctttagGTGATTCTTGACGAGTTTGTGAAACCGAACAAACCTGTTG