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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGATTGTGTTGCTAAATATGTCGGACAACCTGCTGCTGTTATTTTTGGCATGGGTTATGCAACAAACTCGGCTATCATTCCCGTCTTGATTGGAAAGgtaagtatatgctgctacatcttgtgatggacacttatgttactcccaaaacctatgtttttgtagctttatgtgctgccatctgtacag

Basic information

species Arabidopsis thaliana
transcript AT3G48780.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48780.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os11g31640.1 (Oryza sativa), 5'ss of exon 5
TGAGGATTGTGTTGCTAAATATGTCGGACAACCTGCTGCTGTTATTTTTGGCATGGGTTATGCAACAAACTCGGCTATCATTCCCGTCTTGATTGGAAAGgta-----agtatat------gctgctacatcttgtgatggacacttatgttactcccaaaacctatgtttttgtagctttatgtgctgccatctgtacag
 ||||| |  |||||    | ||| ||| | ||||||||| |  | ||||||||||||||||  ||||||||||| ||||||||   | |  | |||||||||     |  |  |      | || |  |||  || |  || |       ||  |  |  | | ||  |    |  ||  || |  ||  ||        
GGAGGAGTTGGTTGCACGCTTTGTTGGAAAGCCTGCTGCTATCCTATTTGGCATGGGTTATGTTACAAACTCGGCCATCATTCCTTGCCTAGTAGGAAAGgtacaatcaaaacgtcaagtggttgatctatccagtaacagaaaacatgactaaacttagcagcaat--taacatgactaaatttcatgttattccag---

upper sequence: AT3G48780.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g70360.1 (Oryza sativa), 5'ss of exon 5
TGAGGATTGTGTTGCTAAATATGTCGGACAACCTGCTGCTGTTATTTTTGGCATGGGTTATGCAACAAACTCGGCTATCATTCCCGTCTTGATTGGAAAGgtaagta--tatgctgctac--atcttgtgatggacacttatgttactcccaaaacctatgtt-tttgtagctttatgtg-ctgccatctgtacag---------------------------------------
 || ||    ||||| | ||  ||| |  | ||| | ||| || |  ||| |||||||||||| || ||||| || |||||||| | ||||||||| ||||||| ||  | || ||  |    | || |  | || |   || ||  |   || |  ||||   | ||||  | | | |  |||   | |||   |                                       
CGAAGAGCTGGTTGCAAGATTCGTCAGGAAGCCTTCGGCTATTCTGCTTGCCATGGGTTATGCCACCAACTCTGCCATCATTCCTGCCTTGATTGGGAAGgtaattagttttgttgtaaatattttttttctagataaagattttgttgtaaatatatatggagtctgtatttgtttatttctgttttttgtttcgtgcatcctggagctgattaatgtactgtaattatttcag

upper sequence: AT3G48780.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G010202_T02 (Zea mays), 5'ss of exon 5
TGAGGATTGTGTTGCTAAATATGTCGGACAACCTGCTGCTGTTATTTTTGGCATGGGTTATGCAACAAACTCGGCTATCATTCCCGTCTTGATTGGAAAGgtaagta-tatgctgctacatcttgtgatggacacttatgttactcccaaaacctatgtttttgtagctttatgtgctgccatctgtacag
 || ||   |||||| | || ||| ||  | ||||| ||| || ||||||||||||| ||||  |||||||| ||||||||||| |   || |||| |||||| ||  |||| ||  |     | || |  |   || ||||     |    | |  | | | | ||||     | |||  ||   | |||
CGAAGAGCTTGTTGCAAGATTTGTTGGTAAGCCTGCAGCTATTCTTTTTGGCATGGGCTATGTGACAAACTCTGCTATCATTCCAGCGCTGGTTGGGAAGgtatgttctatgttgtgaagatatatgctcaaactttctgttttgttcttttcatgagctct-gcagctgaggctactgtaataattgcag

upper sequence: AT3G48780.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g00500.t01 (Vitis vinifera), 5'ss of exon 5
TGAGGATTGTGTTGCTAAATATGTCGGACAACCTGCTGCTGTTATTTTTGGCATGGGTTATGCAACAAACTCGGCTATCATTCCCGTCTTGATTGGAAAGgtaagta------tatgctgctacatcttgtgatggaca---cttatgttactcccaaaacctatgtttttgtagctttatgtgctgccatctgtacag-------------
 ||||| |||||||| || | ||| ||| | ||||||||  |  | ||||||||||| ||||  |||||||| |||||| |||| ||| ||||||| ||||||   |      ||   || ||     | |  || |||   ||||||| |  |        |   || ||    |  | ||   | |    |  |  |             
GGAGGAATGTGTTGCAAACTTTGTTGGAAAGCCTGCTGCAATAGTCTTTGGCATGGGCTATGTGACAAACTCTGCTATCCTTCCGGTCCTGATTGGGAAGgtattcagttatttaaattgatattgtctatattgtacaaggcttatgtaatgcatgggcattgaattctttattcaatgtgaaattcttctttcattgtgatgattcacag