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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGTACCTATAAAAGGTAATGACTGGTTTTGGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGgtaatcttaaggcacatattcttctttcgcatttataaaaatctgaatggaaattgcttcattctcctttttcttttgttctttcag

Basic information

species Arabidopsis thaliana
transcript AT3G48500.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48500.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g01850.t01 (Vitis vinifera), 5'ss of exon 5
ATGGGTACCTATAAAAGGTAATGACTGGTTTTGGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGgtaatcttaaggcacatattcttctttcgcatttataaaaatctgaat---ggaaattgcttcattctcctttttcttttgttctttcag-------------
 ||||| ||||||||||| ||||| |||| |||||| || ||   |||||||||||| |||||||| || |||||||||  ||| |  | | | ||| |  | ||     |  ||| |    ||   | |   | |  |   |||||| |  | |||| ||  |   |  ||             
GTGGGTCCCTATAAAAGGCAATGATTGGTATTGGATTCGCCACCACATAAAAGTTGGTATGCATGTCATTGTTGAAATCCTGgtgag-tgatgccacttgatattgacatggctttttctgcatgcaatttttgtatgtcaattcattgt--tatttccttaatatatgaagcaataagaagtca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164210017|gb|ES162729.1|ES162729
EST:     GGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAGATCACG                         GCAAAAAGAGATCCATACCGGTTTCGGTTTCCCTTGGAGTTGCGCTTC
genomic: GGATCCGGCATTTCATAAAAGTTGGGATGCATGTTATCGTTGAAATCACGgtaatcttaa ... gttctttcagGCAAAAAGAGATCCATACCGGTTTCGGTTTCCCTTGGAGTTGCGCTTC