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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGCCGAAGAAACTCTGGCGGCGGAAGAAGAAACTCGATGCAGCGAATCAACGAAATTCCCGAGAAAAAATCTAGAAAATCTTCCCTTTCCTTCATGGGgtaataatccttactagatcatttgtttacctgacaattactttataaaaatcgatttagtctttgatatgattgttgtgatactctggtgatag

Basic information

species Arabidopsis thaliana
transcript AT3G45780.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125070458|gb|EL135860.1|EL135860
EST:     AAAAATCTAGAAAATCTTCCCTTTCCTTCATGGG                         GATCAAGAAGAAGAGCGAATCTTTGGATGAATCTATAGACGATGGATTTAT
genomic: AAAAATCTAGAAAATCTTCCCTTTCCTTCATGGGgtaataatcc ... ctggtgatagGATCAAGAAGAAGAGCGAATCTTTGGATGAATCTATAGACGATGGATTTAT
EST: gi|125206416|gb|EL221370.1|EL221370
EST:     ACGAAATTCCCGTAGAAAAAATCTAGAAAATCTTCCCTTTCCTTCATGGG                         GATCAAGAAGAAGA
genomic: ACGAAATTCCCG-AGAAAAAATCTAGAAAATCTTCCCTTTCCTTCATGGGgtaataatcc ... ctggtgatagGATCAAGAAGAAGA